Gene Sfri_2090 details

Gene Information

• Locus tag: Sfri_2090
• ID: 4279002
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 2485904
• End bp: 2489320
• Gene Length: 3417 bp
• Protein Length: 1138 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 638134879
• Product: hypothetical protein
• Protein accession: YP_750774
• Protein GI: 114563261

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.00173694
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCACTAA AAATGACTGA ATCACTCATA ACTATCAACC AGCGTTATAA AAGCTCAACC 
CGTATTGATG GTGATAGCGA AGATTTACGG TCCTTTATTG ACGATTTTAT TCTTCATGGT 
ACTGCCGTTA ATGTGCTTGA TACTGTCAGT CGCGAATACG ACGCTAATGC ACAAAGGGTA 
TATACCATTA CAGGGCCTTA TGGTTCAGGT AAATCTACCG TCGCGTTATT TTTATCATGT 
TTATTATCTA CTGATACTAA GTTACGCGAG TACGCTACGG CAAAGTTACA ATCATCGCCT 
GTCCTTTTGT CTGAATTCAA GAAAAGATTT GCTATCAACA TTGGTTGGAA AACGGTTAAA 
CATGTTTGTG GTTTAGAGTC ACCTGCAAAC AGTATTTTAC AAAGTTTGTA TATTGCACTT 
GGTATAACGC ACGATGTGAA TATAATTGCA GACTTAACTG ACGATGAATG TCTTTCTGAA 
ATTAAACTGG CTCTGTCTTC AACGCAAAGT AATGATGATG GTGTATTAAT TTTACTCGAT 
GAAATGGGCA AGGCTTTAGA TTACCAATCA CGCGCTAATA AGGACTTACA TTTATTCCAA 
GCATTAGCTG ACGTAGTTCA ACAAGCTAAT CGCCCTGTAT TGATGATAGG TTTCTTACAT 
CAAGCTTTTT CTGATTACGC TAAAAATAAA GATGCTAAAA CTCAGCAAGA ATGGAGTAAA 
GTTCAGGGGC GCTATCGAGA TCTTAGTTTT AATCCATCAA TTGACGAATC ATTAATCCTC 
GTTGGTGACT CGATAACACG ATCAGCTGAA ATTTCCGTAA AAATAGAAAG CAAGTATGCA 
AAGTTAGTCA ATGTCGTCAG CAGTACTTTC GCTAATCAAA ATCGGAATGT TGGTGCGTTA 
ACCGATACTC TGCCACTTGA CCCTATTGTC AGTTTACTTT TAGGCCCTGT TTCAAGACGC 
CGCTTCTCAC AAAATGAGCG TAGCTTATTC GGTTTTCTTG CATCACATGA AAAGTATGGT 
TTTCGTGAGT TCCTAGAAGA TAACTATACA CAACCTCAAG ATGACTTGGT TTTATACAGG 
CCAGAAATGT ATTGGGATTA CCTTCACCAT AATTTGCATC ACTTAATTGT TACATCGCAT 
GATAGTAAGG CTTGGTTGGA AGGTTGTGAT GCTATATATC GCGCAGAACA AAAAGCAGAA 
GGTAGTGAGC TACATGTTTC TATAACTAAG GTTATTTCAT TACTGACGAT ATTTGGTTTT 
CATCATCAAT TACATGCTAA AAAAGATTTT TTAAAAAAAT ACTTTGTAAA TCGTGGTTAT 
AAAAATACTG AAATAGCTAA AGCGTTAGAT GATTTACAAA CATGGACTGT CATTATTTAC 
CGACAGAAAC ATGATGCTTT GTTTGTATTC CAAGGTAGTG ATATCGATAT CAACACATTG 
ATAAGTGAGC GTGTTGAAGC TGTTAGTCAA GGTGTTGATT GGACTAGCGT TTGTGACTTG 
CCGCAAAATA TATTAGCGAC GGCACACTAT CACAAAACAG GAACAATGCG ATGGGCAACA 
ACTAAGCTCA TCAATAAAGT CGAAAAATCG TTACTTGAAC AGCTCTGTAC TGAGCCGAAA 
ACAGGCGAAG CTTTCCTTAC TTTTGTTTTA TCGGTATCAC CCGATGTGAC AGAAAAGTTT 
AAAGAAATTG CATCAAACTT AAGCCATTGC GTTATCGGTG AGTATGGCGA TTTTAGCATT 
TTACAAACAG CTGCAATTGA GCTGATAGCA CTTAAACAAA TCCTTAAAGA TGAGCAGAAA 
ATCACACATG ACTTGATCGC CAAGAACGAG TTAGAAAACC GCATCATCTT TGCTCAACAA 
AATGTAGAAA AAGAACTGCA ACACATCTAC AAAAATGCAC AGTGGACGCA TTGGAATAAC 
CCATTACCGC CCTCATCTCC TCTTACTTCA TTGGCGTCTG TGATTGCAGA AGAAATCTAT 
CACAAAGCAC CAATTGTAAT TAATGAATTA GTTAACCGCT CTAAACCTTC TGGTAGTGCA 
AACAGTGCCA TTCGTAAATT GATGAATGCA ATGTTTGTAA ATGGCGATAA AAAAGATTTA 
GGTTTCGATG AAACTAGCTT CCCACCAGAG AAAGGCTTAT ATCTATCGTG CTTAAAGAGC 
AAAGGTTGGC ATAATTATAC TCCTGAGGGT TATTTATTCC CCAAAACATG GAGTAAAGAA 
ACCAAAGATG CCAATCCAAA GATGCATGCA CTTTGGCAAG ATGGTTTTAC TTTTATTAAA 
GAGAACTCAA CCACAGCACA TGTTTCCATC GCACAGTTAT ATGAACGTTG GATGTTGCCA 
CCTTTTGGCT TAACAACCGG ACTTTGTCGT ATCTATGGAC TAGCGTTGTT AAAATCACTA 
GAGGGACAAA TTGCCTTTTA TGATTGGGAT TCTACAAATC AGTTTATTTT TATTCCTGAA 
TTAGATGAGG AACTGGTTAA TAAAATCTAT AAGCATCCAC ATGAAGCTGC GGTACGATAT 
TTTGAAATAT CTGATATTCA GAGTCATTTG TTAGAAAATT TAGCTCAAGC TACAATCGGA 
AATGCTAAGA CTGACAGTGC TATTTTGAAT ATAGCAAAAC ACATTGTTGG AATAGTTCAT 
AAGCTACCAT CTTGGGTTAA AAAAACCAGC GGCGAGAGCT TTAGCGGCAG CCAACAAAAT 
GGCTTAACTA AAGAAGCAAG AGACTTTAGA AATAAAGTCA TTGGCGCTAG CGATCCCTTT 
AAGCTTATCT TAGAAGATTT ACCTGCTGTA TTTGGTTTTG ATAAAAATGA CCCCGTTTTA 
GAAGATCAAT TGGGTTATAA GCTGAGAACG GCAATTGAAG ATTTAAGTGC TCAAAATGAT 
ATTTTATATA ATGGATTCAA ACAAATAATC ATTGATACAT TAGGTGAAGA ATTTAATAAA 
AATCTCAAAA CACGTTGCGA ATTTGTTGAG AGCATAGCTA AGCGACCTAA TGTCAAAGAG 
CTTGCTAAAC GAATAGGCCA ATGCATTAAT AACCCGAGTA AATTTGAATT TGTTATTAAT 
CTTGCAACGG GTGCACCTGA GCGTAATTGG ACCGATAAAC ATCTTCGTAA CGGCTTAGAT 
GAATTGCAAA ACTTATGTGT TCAATTTAGA CGTATTGAAT CATTTGGTAA TTTACAAACT 
AAAGGTAGTT CAAAACCTTT GGCATTCATC ACTACGAATA GTGAAGGTAA GCATCAAGAA 
TTTGGTGGTT TTATACAGTA CGATTTAGAA ATGGATAGCG ACGTTTTACA AGTGGTAGAA 
AAAATAAAGT CGTCTTTCTC TGATTTATCT AAAGAGAAAC AATTGGCCGC TTTAACTAAC 
TTGCTAACAA ATTTGATGGA ACAAAGTGAA AGCGGAACAG AGGTTGTTAA TGACTGA 

 

Protein sequence

MALKMTESLI TINQRYKSST RIDGDSEDLR SFIDDFILHG TAVNVLDTVS REYDANAQRV 
YTITGPYGSG KSTVALFLSC LLSTDTKLRE YATAKLQSSP VLLSEFKKRF AINIGWKTVK 
HVCGLESPAN SILQSLYIAL GITHDVNIIA DLTDDECLSE IKLALSSTQS NDDGVLILLD 
EMGKALDYQS RANKDLHLFQ ALADVVQQAN RPVLMIGFLH QAFSDYAKNK DAKTQQEWSK 
VQGRYRDLSF NPSIDESLIL VGDSITRSAE ISVKIESKYA KLVNVVSSTF ANQNRNVGAL 
TDTLPLDPIV SLLLGPVSRR RFSQNERSLF GFLASHEKYG FREFLEDNYT QPQDDLVLYR 
PEMYWDYLHH NLHHLIVTSH DSKAWLEGCD AIYRAEQKAE GSELHVSITK VISLLTIFGF 
HHQLHAKKDF LKKYFVNRGY KNTEIAKALD DLQTWTVIIY RQKHDALFVF QGSDIDINTL 
ISERVEAVSQ GVDWTSVCDL PQNILATAHY HKTGTMRWAT TKLINKVEKS LLEQLCTEPK 
TGEAFLTFVL SVSPDVTEKF KEIASNLSHC VIGEYGDFSI LQTAAIELIA LKQILKDEQK 
ITHDLIAKNE LENRIIFAQQ NVEKELQHIY KNAQWTHWNN PLPPSSPLTS LASVIAEEIY 
HKAPIVINEL VNRSKPSGSA NSAIRKLMNA MFVNGDKKDL GFDETSFPPE KGLYLSCLKS 
KGWHNYTPEG YLFPKTWSKE TKDANPKMHA LWQDGFTFIK ENSTTAHVSI AQLYERWMLP 
PFGLTTGLCR IYGLALLKSL EGQIAFYDWD STNQFIFIPE LDEELVNKIY KHPHEAAVRY 
FEISDIQSHL LENLAQATIG NAKTDSAILN IAKHIVGIVH KLPSWVKKTS GESFSGSQQN 
GLTKEARDFR NKVIGASDPF KLILEDLPAV FGFDKNDPVL EDQLGYKLRT AIEDLSAQND 
ILYNGFKQII IDTLGEEFNK NLKTRCEFVE SIAKRPNVKE LAKRIGQCIN NPSKFEFVIN 
LATGAPERNW TDKHLRNGLD ELQNLCVQFR RIESFGNLQT KGSSKPLAFI TTNSEGKHQE 
FGGFIQYDLE MDSDVLQVVE KIKSSFSDLS KEKQLAALTN LLTNLMEQSE SGTEVVND