95 homologs were found in PanDaTox collection
for query gene Sare_3224 on replicon NC_009953
Organism: Salinispora arenicola CNS-205



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009953  Sare_3224  substrate-binding region of ABC-type glycine betaine transport system  100 
 
 
323 aa  663    Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1628  substrate-binding region of ABC-type glycine betaine transport system  58.62 
 
 
324 aa  403  1e-111  Salinispora arenicola CNS-205  Bacteria  normal  0.634582  normal 
 
 
-
 
NC_009380  Strop_1643  substrate-binding region of ABC-type glycine betaine transport system  57.73 
 
 
323 aa  401  1e-111  Salinispora tropica CNB-440  Bacteria  normal  0.010471  normal 
 
 
-
 
NC_013595  Sros_1794  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  52.35 
 
 
330 aa  338  9e-92  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1134  glycine betaine ABC transporter substrate-binding protein  50.67 
 
 
317 aa  320  1.9999999999999998e-86  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.71375 
 
 
-
 
NC_013595  Sros_1793  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  50.16 
 
 
308 aa  318  9e-86  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2396  Substrate-binding region of ABC-type glycine betaine transport system  48.41 
 
 
314 aa  293  2e-78  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.83747  hitchhiker  0.000913379 
 
 
-
 
NC_008709  Ping_3427  substrate-binding region of ABC-type glycine betaine transport system  30.26 
 
 
310 aa  92  1e-17  Psychromonas ingrahamii 37  Bacteria  normal  hitchhiker  0.00319099 
 
 
-
 
NC_011370  Rleg2_6171  Substrate-binding region of ABC-type glycine betaine transport system  23.27 
 
 
318 aa  85.9  9e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.367394 
 
 
-
 
NC_007494  RSP_3059  ABC proline/glycine betaine transporter, periplasmic substrate-binding protein  24.67 
 
 
333 aa  85.5  0.000000000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.78778  n/a   
 
 
-
 
NC_009050  Rsph17029_3787  substrate-binding region of ABC-type glycine betaine transport system  24.67 
 
 
333 aa  85.5  0.000000000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.347149 
 
 
-
 
NC_007969  Pcryo_1086  substrate-binding region of ABC-type glycine betaine transport system  23.59 
 
 
646 aa  84.7  0.000000000000002  Psychrobacter cryohalolentis K5  Bacteria  normal  0.809733  normal  0.592465 
 
 
-
 
NC_009428  Rsph17025_2828  substrate-binding region of ABC-type glycine betaine transport system  24.75 
 
 
333 aa  82.4  0.000000000000008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.23634 
 
 
-
 
NC_013946  Mrub_1285  Substrate-binding region of ABC-type glycine betaine transport system  24.51 
 
 
334 aa  81.3  0.00000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  0.435568  normal  0.230718 
 
 
-
 
NC_009636  Smed_0650  substrate-binding region of ABC-type glycine betaine transport system  24.18 
 
 
332 aa  80.5  0.00000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.324621 
 
 
-
 
NC_009620  Smed_4889  substrate-binding region of ABC-type glycine betaine transport system  24.01 
 
 
333 aa  76.3  0.0000000000007  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.64177 
 
 
-
 
NC_011989  Avi_2573  ABC transporter substrate binding protein  24.01 
 
 
332 aa  74.7  0.000000000002  Agrobacterium vitis S4  Bacteria  normal  0.0219871  n/a   
 
 
-
 
NC_012848  Rleg_4822  Substrate-binding region of ABC-type glycine betaine transport system  23.95 
 
 
333 aa  73.2  0.000000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1195  substrate-binding region of ABC-type glycine betaine transport system  23.51 
 
 
333 aa  73.2  0.000000000006  Paracoccus denitrificans PD1222  Bacteria  normal  0.353421  normal 
 
 
-
 
NC_008686  Pden_0945  substrate-binding region of ABC-type glycine betaine transport system  23.51 
 
 
333 aa  73.2  0.000000000006  Paracoccus denitrificans PD1222  Bacteria  normal  0.249192  normal 
 
 
-
 
NC_008687  Pden_3856  substrate-binding region of ABC-type glycine betaine transport system  22.04 
 
 
331 aa  71.2  0.00000000002  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.215076 
 
 
-
 
NC_011368  Rleg2_4910  Substrate-binding region of ABC-type glycine betaine transport system  22.73 
 
 
333 aa  70.9  0.00000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_06562  hypothetical protein  21.38 
 
 
330 aa  70.1  0.00000000004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009636  Smed_1767  substrate-binding region of ABC-type glycine betaine transport system  21.04 
 
 
332 aa  66.2  0.0000000008  Sinorhizobium medicae WSM419  Bacteria  normal  0.473646  normal  0.0264882 
 
 
-
 
NC_008346  Swol_1738  ABC transporter substrate-binding protein  23.23 
 
 
340 aa  65.9  0.0000000008  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0735907  n/a   
 
 
-
 
NC_009719  Plav_1066  substrate-binding region of ABC-type glycine betaine transport system  25.2 
 
 
633 aa  65.1  0.000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2919  Substrate-binding region of ABC-type glycine betaine transport system  22.22 
 
 
333 aa  65.9  0.000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0603439  normal 
 
 
-
 
NC_009831  Ssed_4235  ABC transporter substrate-binding protein  22.26 
 
 
334 aa  63.9  0.000000003  Shewanella sediminis HAW-EB3  Bacteria  normal  0.663539  hitchhiker  0.000000168008 
 
 
-
 
NC_009901  Spea_0257  substrate-binding region of ABC-type glycine betaine transport system  21.45 
 
 
334 aa  63.5  0.000000005  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2138  Substrate-binding region of ABC-type glycine betaine transport system  21.9 
 
 
331 aa  63.5  0.000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0458223  normal  0.188194 
 
 
-
 
NC_003910  CPS_4895  putative ABC transporter, substrate-binding protein  22.46 
 
 
318 aa  62  0.00000001  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2382  Substrate-binding region of ABC-type glycine betaine transport system  20.13 
 
 
331 aa  62.4  0.00000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0539771  hitchhiker  0.00933627 
 
 
-
 
NC_007492  Pfl01_2780  substrate-binding region of ABC-type glycine betaine transport system  24.79 
 
 
325 aa  60.1  0.00000005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1845  substrate-binding region of ABC-type glycine betaine transport system  21.58 
 
 
334 aa  59.7  0.00000007  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00000186809  normal  0.0102549 
 
 
-
 
NC_013223  Dret_1472  Substrate-binding region of ABC-type glycine betaine transport system  23.91 
 
 
280 aa  58.5  0.0000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.338312  hitchhiker  0.00631972 
 
 
-
 
NC_003910  CPS_4933  amino acid ABC transporter, periplasmic amino acid-binding protein  22.37 
 
 
323 aa  57.4  0.0000003  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1376  substrate-binding region of ABC-type glycine betaine transport system  21.28 
 
 
652 aa  57.4  0.0000003  Psychrobacter sp. PRwf-1  Bacteria  normal  hitchhiker  0.000369923 
 
 
-
 
NC_013223  Dret_2271  Substrate-binding region of ABC-type glycine betaine transport system  21.43 
 
 
281 aa  57  0.0000004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1889  putative glycine betaine-binding protein precursor  24.46 
 
 
270 aa  56.2  0.0000007  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1606  substrate-binding region of ABC-type glycine betaine transport system  22.18 
 
 
283 aa  55.1  0.000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.823452  normal  0.632336 
 
 
-
 
NC_009943  Dole_2763  substrate-binding region of ABC-type glycine betaine transport system  23.05 
 
 
284 aa  55.8  0.000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0427474  n/a   
 
 
-
 
NC_008463  PA14_22330  putative glycine betaine-binding protein precursor  22.55 
 
 
285 aa  54.7  0.000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000000000132324 
 
 
-
 
NC_013223  Dret_1056  Substrate-binding region of ABC-type glycine betaine transport system  21.69 
 
 
305 aa  53.9  0.000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.511062  normal  0.0333795 
 
 
-
 
NC_007963  Csal_0537  substrate-binding region of ABC-type glycine betaine transport system  22.58 
 
 
312 aa  53.1  0.000005  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4217  Substrate-binding region of ABC-type glycine betaine transport system  22.5 
 
 
319 aa  53.1  0.000006  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_3102  substrate-binding region of ABC-type glycine betaine transport system  24.48 
 
 
286 aa  53.1  0.000006  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1622  glycine betaine-binding protein, putative  22.11 
 
 
328 aa  52.4  0.00001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001569  putative periplasmic substrate-binding protein  21 
 
 
331 aa  52  0.00001  Vibrio sp. Ex25  Bacteria  normal  0.496991  n/a   
 
 
-
 
NC_010625  Bphy_6868  substrate-binding region of ABC-type glycine betaine transport system  22.5 
 
 
293 aa  51.6  0.00002  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_2308  Substrate-binding region of ABC-type glycine betaine transport system  24.48 
 
 
298 aa  51.2  0.00002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00541806  n/a   
 
 
-
 
NC_007005  Psyr_3758  substrate-binding region of ABC-type glycine betaine transport system  21.77 
 
 
284 aa  50.8  0.00003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.597839  normal  0.109477 
 
 
-
 
NC_009636  Smed_2583  substrate-binding region of ABC-type glycine betaine transport system  19.69 
 
 
344 aa  50.4  0.00004  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.201596 
 
 
-
 
NC_010501  PputW619_1291  substrate-binding region of ABC-type glycine betaine transport system  21.05 
 
 
286 aa  50.1  0.00005  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_3306  glycine/betaine/L-proline ABC transporter, periplasmic-binding protein  23.13 
 
 
301 aa  50.1  0.00005  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5836  hypothetical protein  21.62 
 
 
356 aa  50.1  0.00006  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2582  twin-arginine translocation pathway signal  24.48 
 
 
297 aa  50.1  0.00006  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.887396  n/a   
 
 
-
 
NC_009051  Memar_0992  substrate-binding region of ABC-type glycine betaine transport system  26.45 
 
 
289 aa  49.3  0.00009  Methanoculleus marisnigri JR1  Archaea  normal  0.0300335  n/a   
 
 
-
 
NC_010718  Nther_2048  Substrate-binding region of ABC-type glycine betaine transport system  19.84 
 
 
341 aa  48.9  0.0001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0715987  decreased coverage  0.00000000000901879 
 
 
-
 
NC_007492  Pfl01_3319  substrate-binding region of ABC-type glycine betaine transport system  22.18 
 
 
337 aa  48.9  0.0001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A0842  quaternary amine ABC transporter periplasmic substrate-binding protein  24.65 
 
 
345 aa  48.1  0.0002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0754  quaternary amine ABC transporter periplasmic substrate-binding protein  24.65 
 
 
345 aa  48.1  0.0002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0235  substrate-binding region of ABC-type glycine betaine transport system  22.03 
 
 
286 aa  48.1  0.0002  Halorhodospira halophila SL1  Bacteria  hitchhiker  0.00289978  n/a   
 
 
-
 
NC_007955  Mbur_0503  ABC glycine betaine/L-proline transporter, substrate-binding subunit  23.59 
 
 
290 aa  48.5  0.0002  Methanococcoides burtonii DSM 6242  Archaea  normal  0.123581  n/a   
 
 
-
 
NC_009253  Dred_0473  substrate-binding region of ABC-type glycine betaine transport system  24.31 
 
 
284 aa  48.5  0.0002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_3319  Substrate-binding region of ABC-type glycine betaine transport system  21.61 
 
 
279 aa  48.1  0.0002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.28138  n/a   
 
 
-
 
NC_007963  Csal_1901  substrate-binding region of ABC-type glycine betaine transport system  21.38 
 
 
294 aa  48.1  0.0002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.135733  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2122  glycine betaine ABC transporter substrate-binding protein  24.38 
 
 
379 aa  48.1  0.0002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0734  response regulator receiver protein  23.38 
 
 
282 aa  47.8  0.0003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.909833  normal 
 
 
-
 
NC_007963  Csal_0219  ABC-type glycine betaine transport system protein  21.94 
 
 
322 aa  47.8  0.0003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_67400  putative ABC transporter, periplasmic substrate-binding protein  20.67 
 
 
340 aa  47  0.0004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3978  substrate-binding region of ABC-type glycine betaine transport system  20 
 
 
286 aa  47  0.0004  Pseudomonas putida F1  Bacteria  normal  0.508806  normal  0.725555 
 
 
-
 
NC_002947  PP_1741  substrate-binding region of ABC-type glycine betaine transport system  20 
 
 
287 aa  47  0.0005  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2363  substrate-binding region of ABC-type glycine betaine transport system  23.64 
 
 
338 aa  46.2  0.0008  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1333  substrate-binding region of ABC-type glycine betaine transport system  20.36 
 
 
286 aa  46.2  0.0008  Pseudomonas putida GB-1  Bacteria  normal  0.606509  normal 
 
 
-
 
NC_009975  MmarC6_1790  substrate-binding region of ABC-type glycine betaine transport system  22.88 
 
 
295 aa  45.4  0.001  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_013216  Dtox_0517  Substrate-binding region of ABC-type glycine betaine transport system  25.95 
 
 
299 aa  45.8  0.001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.492538 
 
 
-
 
NC_002947  PP_2775  glycine betaine/L-proline ABC transporter, periplasmic binding protein, putative  25.21 
 
 
374 aa  45.1  0.002  Pseudomonas putida KT2440  Bacteria  normal  0.475032  normal 
 
 
-
 
NC_008463  PA14_71160  hypothetical protein  22.84 
 
 
312 aa  44.7  0.002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5238  substrate-binding region of ABC-type glycine betaine transport system  27.2 
 
 
315 aa  45.1  0.002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.848607  normal  0.0231703 
 
 
-
 
NC_011892  Mnod_8403  choline ABC transporter, periplasmic binding protein  22.73 
 
 
312 aa  44.7  0.002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.159983  n/a   
 
 
-
 
NC_010718  Nther_1090  Substrate-binding region of ABC-type glycine betaine transport system  24.03 
 
 
292 aa  45.1  0.002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  unclonable  0.000000000000818491  decreased coverage  0.00172118 
 
 
-
 
NC_010322  PputGB1_0321  choline ABC transporter, periplasmic binding protein  35.09 
 
 
315 aa  43.9  0.003  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_6174  hypothetical protein  22.84 
 
 
312 aa  44.3  0.003  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_5760  substrate-binding region of ABC-type glycine betaine transport system  20.27 
 
 
293 aa  44.3  0.003  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II1854  glycine betaine/L-proline ABC transporter, periplasmic glycine betaine/L-proline-binding protein  23.94 
 
 
379 aa  44.3  0.003  Burkholderia thailandensis E264  Bacteria  normal  0.0466276  n/a   
 
 
-
 
NC_009439  Pmen_0484  substrate-binding region of ABC-type glycine betaine transport system  23.27 
 
 
283 aa  43.5  0.004  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_26190  ABC-type proline/glycine betaine transport system, periplasmic component  23.45 
 
 
301 aa  43.5  0.005  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_3488  substrate-binding region of ABC-type glycine betaine transport system  23.47 
 
 
303 aa  43.5  0.005  Salinispora arenicola CNS-205  Bacteria  normal  0.15074  normal  0.0153666 
 
 
-
 
NC_010501  PputW619_4912  choline ABC transporter, periplasmic binding protein  35.09 
 
 
315 aa  43.1  0.006  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00426686 
 
 
-
 
NC_008531  LEUM_0358  ABC-type proline/glycine betaine transport system, permease component  23.33 
 
 
571 aa  43.1  0.006  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.963399  n/a   
 
 
-
 
NC_008942  Mlab_1062  hypothetical protein  26.57 
 
 
298 aa  42.7  0.008  Methanocorpusculum labreanum Z  Archaea  normal  normal 
 
 
-
 
NC_008463  PA14_67300  putative binding protein component of ABC transporter  20.16 
 
 
322 aa  42.7  0.009  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2216  substrate-binding region of ABC-type glycine betaine transport system  22.69 
 
 
338 aa  42.7  0.009  Pseudomonas putida F1  Bacteria  normal  0.228946  normal 
 
 
-
 
NC_011989  Avi_3281  ABC transporter substrate binding protein (proline/glycine betaine)  24 
 
 
333 aa  42.4  0.01  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B0588  ABC proline/glycine betaine transporter, periplasmic ligand binding protein  22.3 
 
 
321 aa  42.4  0.01  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
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