| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2573 |
|---|
| Symbol | |
|---|
| ID | 7386588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2127353 |
|---|
| End bp | 2128351 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643651667 |
|---|
| Product | ABC transporter substrate binding protein |
|---|
| Protein accession | YP_002549855 |
|---|
| Protein GI | 222148898 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0219871 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGACAT TGATCGTTTC CACGATACTC GCCGCCGGAT TGTATGGCAT GGCCGGTTCT
GCCGAAGCTG CCGATTGCGG TTCGGTCTCC ATTGCGGAAA TGAACTGGGC CTCAGCCGGC
GTCGCGGCCA ATGTCGACAA GATCATTCTG GAAAGCGGTT ATGGTTGTTC CGTCAATCTG
GTGACCGGCG ACACCATGCC AACCTTTACC TCAATGAACG AAAAGGGCGA GCCGGATCTC
GCCCCTGAGC TTTGGGTCAA TACGATTCAA AAGCCACTGG CGGAAGCCGT CAAGGACGGT
CGCCTGCTGA AAGCCGCACG CATTCTGAAG GATGGCGGCG TTGAGGGCTG GTGGGTTCCG
AAATATATCA CCGATGAGCA TCCCGACATC AAGACTGTCC AGGACGCGCT GAAACATCCC
GAGCTTTTTC CCGCCCCGGA AGATCCGTCC AAGGGCGCTG TTACCAATTG CCCATCCGGT
TGGGCCTGCC AGGTGACAAC GGAGAATATC TACAAGGCGC TGAAGGGTGA CGATGCAGGC
TTCCAGCTTG TCGATAGCGG CTCGTCTGCC GCGCTGGACG GCTCGATTGC CAATGCCATT
GAAAAGAGGC AGGGATGGCT TGGCTATTAT TGGGCGCCGA CCGCCATTCT CGGCAAATAT
GATATGGTCA AGCTTGGCAT GGATACTCCC TTCGACAAGG CGGAATGGGA CCGCTGCACC
TCGGTTGCCG ATTGTGCAGA TCCCCGTGTC AACGATTATC CGGTCACGGA TGTCTATAGT
GTCGTTACCA AGAACTTTGC CGAGAAGGCA GGTGTGACGA TGGACTATGT CGGCAAACGC
CAGTGGGACA ATGAAACCAT CGGCAAGGTT CTGGCCTGGA TGAGCGAAAA CCAGGCGGAC
AATGCCGATG CGGCCGAATA TTTCCTGAAG ACCTATCCCG ATGTCTGGAC ACAGTGGGTC
TCGCCTGACG TCGCTGAAAA GGTCAAAGCC GCTCTTTGA
|
|---|
| Protein sequence | MRTLIVSTIL AAGLYGMAGS AEAADCGSVS IAEMNWASAG VAANVDKIIL ESGYGCSVNL
VTGDTMPTFT SMNEKGEPDL APELWVNTIQ KPLAEAVKDG RLLKAARILK DGGVEGWWVP
KYITDEHPDI KTVQDALKHP ELFPAPEDPS KGAVTNCPSG WACQVTTENI YKALKGDDAG
FQLVDSGSSA ALDGSIANAI EKRQGWLGYY WAPTAILGKY DMVKLGMDTP FDKAEWDRCT
SVADCADPRV NDYPVTDVYS VVTKNFAEKA GVTMDYVGKR QWDNETIGKV LAWMSENQAD
NADAAEYFLK TYPDVWTQWV SPDVAEKVKA AL
|
|---|
| |