94 homologs were found in PanDaTox collection
for query gene Avi_2573 on replicon NC_011989
Organism: Agrobacterium vitis S4



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011989  Avi_2573  ABC transporter substrate binding protein  100 
 
 		 332 aa  679    Agrobacterium vitis S4  Bacteria  normal  0.0219871  n/a   
 
 
-
 
NC_009636  Smed_1767  substrate-binding region of ABC-type glycine betaine transport system  66.87 
 
 		 332 aa  476  1e-133  Sinorhizobium medicae WSM419  Bacteria  normal  0.473646  normal  0.0264882 
 
 
-
 
NC_009050  Rsph17029_3787  substrate-binding region of ABC-type glycine betaine transport system  68.92 
 
 		 333 aa  457  1e-127  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.347149 
 
 
-
 
NC_007494  RSP_3059  ABC proline/glycine betaine transporter, periplasmic substrate-binding protein  68.92 
 
 		 333 aa  456  1e-127  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.78778  n/a   
 
 
-
 
NC_009428  Rsph17025_2828  substrate-binding region of ABC-type glycine betaine transport system  67.46 
 
 		 333 aa  445  1.0000000000000001e-124  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.23634 
 
 
-
 
NC_012850  Rleg_2382  Substrate-binding region of ABC-type glycine betaine transport system  59.04 
 
 		 331 aa  432  1e-120  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0539771  hitchhiker  0.00933627 
 
 
-
 
NC_011369  Rleg2_2138  Substrate-binding region of ABC-type glycine betaine transport system  57.53 
 
 		 331 aa  422  1e-117  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0458223  normal  0.188194 
 
 
-
 
NC_008687  Pden_3856  substrate-binding region of ABC-type glycine betaine transport system  58.73 
 
 		 331 aa  414  1e-114  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.215076 
 
 
-
 
NC_009636  Smed_0650  substrate-binding region of ABC-type glycine betaine transport system  57.83 
 
 		 332 aa  413  1e-114  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.324621 
 
 
-
 
NC_011368  Rleg2_4910  Substrate-binding region of ABC-type glycine betaine transport system  54.95 
 
 		 333 aa  399  9.999999999999999e-111  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012848  Rleg_4822  Substrate-binding region of ABC-type glycine betaine transport system  54.95 
 
 		 333 aa  396  1e-109  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009620  Smed_4889  substrate-binding region of ABC-type glycine betaine transport system  53.45 
 
 		 333 aa  385  1e-106  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.64177 
 
 
-
 
NC_010506  Swoo_1845  substrate-binding region of ABC-type glycine betaine transport system  50.6 
 
 		 334 aa  359  3e-98  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00000186809  normal  0.0102549 
 
 
-
 
NC_008686  Pden_0945  substrate-binding region of ABC-type glycine betaine transport system  50.3 
 
 		 333 aa  359  4e-98  Paracoccus denitrificans PD1222  Bacteria  normal  0.249192  normal  1 
 
 
-
 
NC_008686  Pden_1195  substrate-binding region of ABC-type glycine betaine transport system  50.3 
 
 		 333 aa  359  4e-98  Paracoccus denitrificans PD1222  Bacteria  normal  0.353421  normal  1 
 
 
-
 
NC_011369  Rleg2_2919  Substrate-binding region of ABC-type glycine betaine transport system  51.05 
 
 		 333 aa  351  1e-95  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0603439  normal  1 
 
 
-
 
NC_009784  VIBHAR_06562  hypothetical protein  48.56 
 
 		 330 aa  340  2e-92  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_0257  substrate-binding region of ABC-type glycine betaine transport system  51.14 
 
 		 334 aa  338  7e-92  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_4235  ABC transporter substrate-binding protein  47.95 
 
 		 334 aa  322  5e-87  Shewanella sediminis HAW-EB3  Bacteria  normal  0.663539  hitchhiker  0.000000168008 
 
 
-
 
NC_013457  VEA_001569  putative periplasmic substrate-binding protein  46.33 
 
 		 331 aa  316  4e-85  Vibrio sp. Ex25  Bacteria  normal  0.496991  n/a   
 
 
-
 
NC_003910  CPS_4933  amino acid ABC transporter, periplasmic amino acid-binding protein  35.76 
 
 		 323 aa  239  5.999999999999999e-62  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1285  Substrate-binding region of ABC-type glycine betaine transport system  31.47 
 
 		 334 aa  179  5.999999999999999e-44  Meiothermus ruber DSM 1279  Bacteria  normal  0.435568  normal  0.230718 
 
 
-
 
NC_007969  Pcryo_1086  substrate-binding region of ABC-type glycine betaine transport system  32.79 
 
 		 646 aa  167  2.9999999999999998e-40  Psychrobacter cryohalolentis K5  Bacteria  normal  0.809733  normal  0.592465 
 
 
-
 
NC_009719  Plav_1066  substrate-binding region of ABC-type glycine betaine transport system  31.91 
 
 		 633 aa  164  2.0000000000000002e-39  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_3319  substrate-binding region of ABC-type glycine betaine transport system  31.69 
 
 		 337 aa  164  2.0000000000000002e-39  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009524  PsycPRwf_1376  substrate-binding region of ABC-type glycine betaine transport system  32.29 
 
 		 652 aa  160  3e-38  Psychrobacter sp. PRwf-1  Bacteria  normal  1  hitchhiker  0.000369923 
 
 
-
 
NC_009656  PSPA7_5836  hypothetical protein  28.49 
 
 		 356 aa  156  4e-37  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_2543  substrate-binding region of ABC-type glycine betaine transport system  32.49 
 
 		 342 aa  155  8e-37  Chelativorans sp. BNC1  Bacteria  normal  0.221502  n/a   
 
 
-
 
NC_007005  Psyr_3778  substrate-binding region of ABC-type glycine betaine transport system  31.76 
 
 		 337 aa  155  9e-37  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.110017 
 
 
-
 
NC_008463  PA14_67400  putative ABC transporter, periplasmic substrate-binding protein  27.75 
 
 		 340 aa  155  1e-36  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008346  Swol_1738  ABC transporter substrate-binding protein  30.89 
 
 		 340 aa  150  4e-35  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0735907  n/a   
 
 
-
 
NC_007492  Pfl01_4344  substrate-binding region of ABC-type glycine betaine transport system  30.03 
 
 		 337 aa  150  4e-35  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010718  Nther_2048  Substrate-binding region of ABC-type glycine betaine transport system  31.95 
 
 		 341 aa  148  1.0000000000000001e-34  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0715987  decreased coverage  0.00000000000901879 
 
 
-
 
NC_009636  Smed_2583  substrate-binding region of ABC-type glycine betaine transport system  30.72 
 
 		 344 aa  147  3e-34  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.201596 
 
 
-
 
NC_009512  Pput_2216  substrate-binding region of ABC-type glycine betaine transport system  28.32 
 
 		 338 aa  146  5e-34  Pseudomonas putida F1  Bacteria  normal  0.228946  normal  1 
 
 
-
 
NC_002947  PP_3558  substrate-binding region of ABC-type glycine betaine transport system  28.07 
 
 		 338 aa  144  2e-33  Pseudomonas putida KT2440  Bacteria  normal  0.561868  normal  1 
 
 
-
 
NC_004578  PSPTO_5271  histidine transporter, periplasmic histidine-binding protein  28.12 
 
 		 322 aa  140  3e-32  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_2363  substrate-binding region of ABC-type glycine betaine transport system  28.92 
 
 		 338 aa  139  7e-32  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007005  Psyr_4829  substrate-binding region of ABC-type glycine betaine transport system  27.83 
 
 		 322 aa  138  1e-31  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.93299 
 
 
-
 
NC_007492  Pfl01_0362  substrate-binding region of ABC-type glycine betaine transport system  26.98 
 
 		 322 aa  138  2e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.376501  normal  1 
 
 
-
 
NC_009832  Spro_0802  substrate-binding region of ABC-type glycine betaine transport system  28.78 
 
 		 321 aa  136  6.0000000000000005e-31  Serratia proteamaculans 568  Bacteria  normal  0.0332812  normal  1 
 
 
-
 
NC_008463  PA14_67300  putative binding protein component of ABC transporter  26.43 
 
 		 322 aa  134  1.9999999999999998e-30  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_1600  ABC transporter, periplasmic substrate-binding protein, putative  31.59 
 
 		 337 aa  134  1.9999999999999998e-30  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.865849  n/a   
 
 
-
 
NC_007511  Bcep18194_B2845  ABC proline/glycine betaine transporter, periplasmic ligand binding protein  31.23 
 
 		 345 aa  132  6e-30  Burkholderia sp. 383  Bacteria  normal  1  normal  0.894091 
 
 
-
 
NC_009656  PSPA7_5830  ABC transporter periplasmic binding protein  25.51 
 
 		 322 aa  130  3e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_1794  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  26.95 
 
 		 330 aa  92.4  1e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009380  Strop_1643  substrate-binding region of ABC-type glycine betaine transport system  26.77 
 
 		 323 aa  86.3  7e-16  Salinispora tropica CNB-440  Bacteria  normal  0.010471  normal  1 
 
 
-
 
NC_009953  Sare_1628  substrate-binding region of ABC-type glycine betaine transport system  25.08 
 
 		 324 aa  79.7  0.00000000000006  Salinispora arenicola CNS-205  Bacteria  normal  0.634582  normal  1 
 
 
-
 
NC_009953  Sare_3224  substrate-binding region of ABC-type glycine betaine transport system  24.01 
 
 		 323 aa  74.7  0.000000000002  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014165  Tbis_1134  glycine betaine ABC transporter substrate-binding protein  23.1 
 
 		 317 aa  70.1  0.00000000006  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.71375 
 
 
-
 
NC_011370  Rleg2_6171  Substrate-binding region of ABC-type glycine betaine transport system  25.58 
 
 		 318 aa  67  0.0000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.367394 
 
 
-
 
NC_013947  Snas_2396  Substrate-binding region of ABC-type glycine betaine transport system  22.56 
 
 		 314 aa  65.5  0.000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.83747  hitchhiker  0.000913379 
 
 
-
 
NC_013595  Sros_1793  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  24.15 
 
 		 308 aa  65.5  0.000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013440  Hoch_5464  Substrate-binding region of ABC-type glycine betaine transport system  27.05 
 
 		 312 aa  62  0.00000001  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.102731 
 
 
-
 
NC_011883  Ddes_0822  Substrate-binding region of ABC-type glycine betaine transport system  21.1 
 
 		 287 aa  59.7  0.00000007  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  1  n/a   
 
 
-
 
NC_008392  Bamb_5760  substrate-binding region of ABC-type glycine betaine transport system  23.77 
 
 		 293 aa  55.5  0.000001  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_2775  glycine betaine/L-proline ABC transporter, periplasmic binding protein, putative  26.79 
 
 		 374 aa  54.7  0.000002  Pseudomonas putida KT2440  Bacteria  normal  0.475032  normal  1 
 
 
-
 
NC_011894  Mnod_3406  Substrate-binding region of ABC-type glycine betaine transport system  27.03 
 
 		 278 aa  55.1  0.000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_008709  Ping_3427  substrate-binding region of ABC-type glycine betaine transport system  27.51 
 
 		 310 aa  54.3  0.000003  Psychromonas ingrahamii 37  Bacteria  normal  1  hitchhiker  0.00319099 
 
 
-
 
NC_009439  Pmen_0485  substrate-binding region of ABC-type glycine betaine transport system  21.78 
 
 		 314 aa  53.5  0.000004  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010625  Bphy_6868  substrate-binding region of ABC-type glycine betaine transport system  22.74 
 
 		 293 aa  52.8  0.000009  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011658  BCAH187_A2839  putative glycine betaine/L-proline ABC transporter, glycine betaine/L-proline-binding protein  21.7 
 
 		 285 aa  52  0.00001  Bacillus cereus AH187  Bacteria  hitchhiker  0.00244909  n/a   
 
 
-
 
NC_013223  Dret_0905  Substrate-binding region of ABC-type glycine betaine transport system  22.77 
 
 		 283 aa  52  0.00001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.121649  normal  1 
 
 
-
 
NC_009253  Dred_0473  substrate-binding region of ABC-type glycine betaine transport system  21.26 
 
 		 284 aa  52.4  0.00001  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_2780  substrate-binding region of ABC-type glycine betaine transport system  25.12 
 
 		 325 aa  51.2  0.00002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008751  Dvul_0958  substrate-binding region of ABC-type glycine betaine transport system  22.36 
 
 		 285 aa  50.1  0.00005  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.00282078  normal  0.248441 
 
 
-
 
NC_010322  PputGB1_0328  choline ABC transporter, periplasmic binding protein  20.43 
 
 		 314 aa  50.1  0.00006  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_006274  BCZK2517  glycine betaine-binding protein  21.07 
 
 		 285 aa  50.1  0.00006  Bacillus cereus E33L  Bacteria  normal  0.352464  n/a   
 
 
-
 
NC_005945  BAS2598  glycine betaine/L-proline ABC transporter glycine betaine/L-proline-binding protein  21.38 
 
 		 285 aa  49.7  0.00007  Bacillus anthracis str. Sterne  Bacteria  normal  0.968236  n/a   
 
 
-
 
NC_005957  BT9727_2550  glycine betaine-binding protein  21.38 
 
 		 285 aa  49.7  0.00007  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0193266  n/a   
 
 
-
 
NC_007530  GBAA_2787  glycine betaine/L-proline ABC transporter glycine betaine/L-proline-binding protein  21.38 
 
 		 285 aa  49.7  0.00007  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B2495  putative glycine betaine/L-proline ABC transporter, glycine betaine/L-proline-binding protein  21.38 
 
 		 285 aa  49.3  0.00009  Bacillus cereus G9842  Bacteria  hitchhiker  0.000174005  normal  0.563151 
 
 
-
 
NC_011773  BCAH820_2794  putative glycine betaine/L-proline ABC transporter, glycine betaine/L-proline-binding protein  21.38 
 
 		 285 aa  49.3  0.0001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00276251 
 
 
-
 
NC_004578  PSPTO_3058  glycine betaine ABC transporter, periplasmic glycine betaine-binding protein  25.52 
 
 		 325 aa  48.1  0.0002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.302341  n/a   
 
 
-
 
NC_002947  PP_0304  hypothetical protein  19.94 
 
 		 322 aa  48.5  0.0002  Pseudomonas putida KT2440  Bacteria  normal  1  hitchhiker  0.00268504 
 
 
-
 
NC_011725  BCB4264_A2797  putative glycine betaine/L-proline ABC transporter, glycine betaine/L-proline-binding protein  21.07 
 
 		 285 aa  47.8  0.0003  Bacillus cereus B4264  Bacteria  normal  0.0779881  n/a   
 
 
-
 
NC_009668  Oant_3887  substrate-binding region of ABC-type glycine betaine transport system  25.37 
 
 		 288 aa  47.8  0.0003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.326958  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2592  substrate-binding region of ABC-type glycine betaine transport system  21.38 
 
 		 285 aa  47.4  0.0003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.017258  n/a   
 
 
-
 
NC_009512  Pput_0324  substrate-binding region of ABC-type glycine betaine transport system  19.94 
 
 		 314 aa  47  0.0004  Pseudomonas putida F1  Bacteria  normal  0.210112  normal  0.40501 
 
 
-
 
NC_011830  Dhaf_2308  Substrate-binding region of ABC-type glycine betaine transport system  21.58 
 
 		 298 aa  47  0.0004  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00541806  n/a   
 
 
-
 
NC_004311  BRA0738  glycine betaine/L-proline ABC transporter, periplasmic glycine betaine-binding protein, putative  22.78 
 
 		 288 aa  47  0.0004  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_009674  Bcer98_1909  substrate-binding region of ABC-type glycine betaine transport system  21.7 
 
 		 285 aa  46.6  0.0006  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_011728  BbuZS7_0144  glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein  25 
 
 		 290 aa  46.2  0.0008  Borrelia burgdorferi ZS7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_2763  substrate-binding region of ABC-type glycine betaine transport system  22.53 
 
 		 284 aa  45.4  0.001  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0427474  n/a   
 
 
-
 
NC_009439  Pmen_0063  substrate-binding region of ABC-type glycine betaine transport system  22.3 
 
 		 306 aa  45.4  0.001  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_2691  glycine betaine transporter periplasmic subunit  25.94 
 
 		 342 aa  45.4  0.001  Pseudomonas putida GB-1  Bacteria  normal  0.208597  normal  0.538779 
 
 
-
 
NC_010718  Nther_1620  Substrate-binding region of ABC-type glycine betaine transport system  21.69 
 
 		 293 aa  44.7  0.002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  decreased coverage  0.00000000349679  hitchhiker  0.00000000178449 
 
 
-
 
NC_007963  Csal_1901  substrate-binding region of ABC-type glycine betaine transport system  21.77 
 
 		 294 aa  44.7  0.002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.135733  n/a   
 
 
-
 
NC_008148  Rxyl_1557  twin-arginine translocation pathway signal  23.36 
 
 		 313 aa  44.3  0.003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.254611  n/a   
 
 
-
 
NC_009656  PSPA7_6163  hypothetical protein  21.29 
 
 		 312 aa  44.3  0.003  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_0734  response regulator receiver protein  21.36 
 
 		 282 aa  43.5  0.005  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.909833  normal  1 
 
 
-
 
NC_003910  CPS_4895  putative ABC transporter, substrate-binding protein  23.62 
 
 		 318 aa  43.1  0.006  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_013223  Dret_2271  Substrate-binding region of ABC-type glycine betaine transport system  21.04 
 
 		 281 aa  43.1  0.007  Desulfohalobium retbaense DSM 5692  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_71030  hypothetical protein  22.19 
 
 		 312 aa  42.7  0.008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
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