65 homologs were found in PanDaTox collection
for query gene VEA_001569 on replicon NC_013457
Organism: Vibrio sp. Ex25



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013457  VEA_001569  putative periplasmic substrate-binding protein  100 
 
 		 331 aa  692    Vibrio sp. Ex25  Bacteria  normal  0.496991  n/a   
 
 
-
 
NC_009784  VIBHAR_06562  hypothetical protein  68.47 
 
 		 330 aa  484  1e-136  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_1845  substrate-binding region of ABC-type glycine betaine transport system  58.9 
 
 		 334 aa  431  1e-120  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00000186809  normal  0.0102549 
 
 
-
 
NC_009901  Spea_0257  substrate-binding region of ABC-type glycine betaine transport system  61.17 
 
 		 334 aa  427  1e-118  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_4235  ABC transporter substrate-binding protein  59.87 
 
 		 334 aa  415  9.999999999999999e-116  Shewanella sediminis HAW-EB3  Bacteria  normal  0.663539  hitchhiker  0.000000168008 
 
 
-
 
NC_007494  RSP_3059  ABC proline/glycine betaine transporter, periplasmic substrate-binding protein  44.87 
 
 		 333 aa  320  1.9999999999999998e-86  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.78778  n/a   
 
 
-
 
NC_009050  Rsph17029_3787  substrate-binding region of ABC-type glycine betaine transport system  44.55 
 
 		 333 aa  318  6e-86  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.347149 
 
 
-
 
NC_011989  Avi_2573  ABC transporter substrate binding protein  45.12 
 
 		 332 aa  318  6e-86  Agrobacterium vitis S4  Bacteria  normal  0.0219871  n/a   
 
 
-
 
NC_009636  Smed_0650  substrate-binding region of ABC-type glycine betaine transport system  45.59 
 
 		 332 aa  317  2e-85  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.324621 
 
 
-
 
NC_009428  Rsph17025_2828  substrate-binding region of ABC-type glycine betaine transport system  47.14 
 
 		 333 aa  309  4e-83  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.23634 
 
 
-
 
NC_008687  Pden_3856  substrate-binding region of ABC-type glycine betaine transport system  45.11 
 
 		 331 aa  308  6.999999999999999e-83  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.215076 
 
 
-
 
NC_009636  Smed_1767  substrate-binding region of ABC-type glycine betaine transport system  41.38 
 
 		 332 aa  301  7.000000000000001e-81  Sinorhizobium medicae WSM419  Bacteria  normal  0.473646  normal  0.0264882 
 
 
-
 
NC_008686  Pden_1195  substrate-binding region of ABC-type glycine betaine transport system  44.65 
 
 		 333 aa  300  2e-80  Paracoccus denitrificans PD1222  Bacteria  normal  0.353421  normal  1 
 
 
-
 
NC_008686  Pden_0945  substrate-binding region of ABC-type glycine betaine transport system  44.65 
 
 		 333 aa  300  2e-80  Paracoccus denitrificans PD1222  Bacteria  normal  0.249192  normal  1 
 
 
-
 
NC_009620  Smed_4889  substrate-binding region of ABC-type glycine betaine transport system  44.41 
 
 		 333 aa  300  2e-80  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.64177 
 
 
-
 
NC_012848  Rleg_4822  Substrate-binding region of ABC-type glycine betaine transport system  44.3 
 
 		 333 aa  299  5e-80  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011368  Rleg2_4910  Substrate-binding region of ABC-type glycine betaine transport system  43.99 
 
 		 333 aa  294  2e-78  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012850  Rleg_2382  Substrate-binding region of ABC-type glycine betaine transport system  40.06 
 
 		 331 aa  289  6e-77  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0539771  hitchhiker  0.00933627 
 
 
-
 
NC_011369  Rleg2_2138  Substrate-binding region of ABC-type glycine betaine transport system  39.45 
 
 		 331 aa  283  3.0000000000000004e-75  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0458223  normal  0.188194 
 
 
-
 
NC_011369  Rleg2_2919  Substrate-binding region of ABC-type glycine betaine transport system  38.6 
 
 		 333 aa  262  4.999999999999999e-69  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0603439  normal  1 
 
 
-
 
NC_003910  CPS_4933  amino acid ABC transporter, periplasmic amino acid-binding protein  37.61 
 
 		 323 aa  246  6e-64  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1285  Substrate-binding region of ABC-type glycine betaine transport system  31.18 
 
 		 334 aa  172  7.999999999999999e-42  Meiothermus ruber DSM 1279  Bacteria  normal  0.435568  normal  0.230718 
 
 
-
 
NC_008463  PA14_67300  putative binding protein component of ABC transporter  31.12 
 
 		 322 aa  164  1.0000000000000001e-39  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_5830  ABC transporter periplasmic binding protein  31.12 
 
 		 322 aa  159  5e-38  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009524  PsycPRwf_1376  substrate-binding region of ABC-type glycine betaine transport system  29.9 
 
 		 652 aa  158  1e-37  Psychrobacter sp. PRwf-1  Bacteria  normal  1  hitchhiker  0.000369923 
 
 
-
 
NC_007969  Pcryo_1086  substrate-binding region of ABC-type glycine betaine transport system  28.1 
 
 		 646 aa  157  2e-37  Psychrobacter cryohalolentis K5  Bacteria  normal  0.809733  normal  0.592465 
 
 
-
 
NC_009832  Spro_0802  substrate-binding region of ABC-type glycine betaine transport system  29.52 
 
 		 321 aa  149  5e-35  Serratia proteamaculans 568  Bacteria  normal  0.0332812  normal  1 
 
 
-
 
NC_008463  PA14_67400  putative ABC transporter, periplasmic substrate-binding protein  29.12 
 
 		 340 aa  149  6e-35  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007005  Psyr_3778  substrate-binding region of ABC-type glycine betaine transport system  29.45 
 
 		 337 aa  149  6e-35  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.110017 
 
 
-
 
NC_007005  Psyr_4829  substrate-binding region of ABC-type glycine betaine transport system  28.44 
 
 		 322 aa  149  9e-35  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.93299 
 
 
-
 
NC_004578  PSPTO_5271  histidine transporter, periplasmic histidine-binding protein  27.99 
 
 		 322 aa  149  9e-35  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_008346  Swol_1738  ABC transporter substrate-binding protein  28.62 
 
 		 340 aa  148  1.0000000000000001e-34  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0735907  n/a   
 
 
-
 
NC_008254  Meso_2543  substrate-binding region of ABC-type glycine betaine transport system  29.61 
 
 		 342 aa  148  1.0000000000000001e-34  Chelativorans sp. BNC1  Bacteria  normal  0.221502  n/a   
 
 
-
 
NC_007492  Pfl01_0362  substrate-binding region of ABC-type glycine betaine transport system  29.31 
 
 		 322 aa  147  3e-34  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.376501  normal  1 
 
 
-
 
NC_009636  Smed_2583  substrate-binding region of ABC-type glycine betaine transport system  30.97 
 
 		 344 aa  146  5e-34  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.201596 
 
 
-
 
NC_007492  Pfl01_3319  substrate-binding region of ABC-type glycine betaine transport system  28.75 
 
 		 337 aa  145  1e-33  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009719  Plav_1066  substrate-binding region of ABC-type glycine betaine transport system  29.63 
 
 		 633 aa  144  2e-33  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_5836  hypothetical protein  28.02 
 
 		 356 aa  141  9.999999999999999e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_4344  substrate-binding region of ABC-type glycine betaine transport system  27.7 
 
 		 337 aa  140  3.9999999999999997e-32  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009512  Pput_2216  substrate-binding region of ABC-type glycine betaine transport system  26.74 
 
 		 338 aa  139  6e-32  Pseudomonas putida F1  Bacteria  normal  0.228946  normal  1 
 
 
-
 
NC_002947  PP_3558  substrate-binding region of ABC-type glycine betaine transport system  26.45 
 
 		 338 aa  136  6.0000000000000005e-31  Pseudomonas putida KT2440  Bacteria  normal  0.561868  normal  1 
 
 
-
 
NC_010322  PputGB1_2363  substrate-binding region of ABC-type glycine betaine transport system  25.77 
 
 		 338 aa  132  6.999999999999999e-30  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007511  Bcep18194_B2845  ABC proline/glycine betaine transporter, periplasmic ligand binding protein  27.94 
 
 		 345 aa  130  3e-29  Burkholderia sp. 383  Bacteria  normal  1  normal  0.894091 
 
 
-
 
NC_004578  PSPTO_1600  ABC transporter, periplasmic substrate-binding protein, putative  28.57 
 
 		 337 aa  129  5.0000000000000004e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.865849  n/a   
 
 
-
 
NC_010718  Nther_2048  Substrate-binding region of ABC-type glycine betaine transport system  26.84 
 
 		 341 aa  117  3e-25  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0715987  decreased coverage  0.00000000000901879 
 
 
-
 
NC_013947  Snas_2396  Substrate-binding region of ABC-type glycine betaine transport system  25.47 
 
 		 314 aa  75.1  0.000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.83747  hitchhiker  0.000913379 
 
 
-
 
NC_009380  Strop_1643  substrate-binding region of ABC-type glycine betaine transport system  23.78 
 
 		 323 aa  65.5  0.000000001  Salinispora tropica CNB-440  Bacteria  normal  0.010471  normal  1 
 
 
-
 
NC_009953  Sare_1628  substrate-binding region of ABC-type glycine betaine transport system  23.55 
 
 		 324 aa  62  0.00000001  Salinispora arenicola CNS-205  Bacteria  normal  0.634582  normal  1 
 
 
-
 
NC_014165  Tbis_1134  glycine betaine ABC transporter substrate-binding protein  21.84 
 
 		 317 aa  61.2  0.00000002  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.71375 
 
 
-
 
NC_011370  Rleg2_6171  Substrate-binding region of ABC-type glycine betaine transport system  22.73 
 
 		 318 aa  60.8  0.00000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.367394 
 
 
-
 
NC_013595  Sros_1794  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  20.27 
 
 		 330 aa  57.4  0.0000004  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_1793  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  22.92 
 
 		 308 aa  53.9  0.000004  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_2780  substrate-binding region of ABC-type glycine betaine transport system  24.14 
 
 		 325 aa  53.5  0.000005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011883  Ddes_0822  Substrate-binding region of ABC-type glycine betaine transport system  20.83 
 
 		 287 aa  53.1  0.000007  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  1  n/a   
 
 
-
 
NC_009953  Sare_3224  substrate-binding region of ABC-type glycine betaine transport system  21 
 
 		 323 aa  52  0.00001  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007963  Csal_0537  substrate-binding region of ABC-type glycine betaine transport system  21.9 
 
 		 312 aa  48.9  0.0001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_0063  substrate-binding region of ABC-type glycine betaine transport system  22.15 
 
 		 306 aa  48.5  0.0001  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007519  Dde_0675  glycine/betaine/L-proline ABC transporter, periplasmic-binding protein  22.15 
 
 		 279 aa  48.5  0.0002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.000223596  n/a   
 
 
-
 
NC_008709  Ping_3427  substrate-binding region of ABC-type glycine betaine transport system  22.22 
 
 		 310 aa  47  0.0005  Psychromonas ingrahamii 37  Bacteria  normal  1  hitchhiker  0.00319099 
 
 
-
 
NC_009253  Dred_0473  substrate-binding region of ABC-type glycine betaine transport system  22.14 
 
 		 284 aa  45.8  0.001  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013457  VEA_000363  L-proline glycine betaine binding ABC transporter protein proX  25.55 
 
 		 312 aa  45.1  0.002  Vibrio sp. Ex25  Bacteria  normal  0.743651  n/a   
 
 
-
 
NC_008751  Dvul_0958  substrate-binding region of ABC-type glycine betaine transport system  22.26 
 
 		 285 aa  44.3  0.003  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.00282078  normal  0.248441 
 
 
-
 
NC_008312  Tery_4110  substrate-binding region of ABC-type glycine betaine transport system  24.45 
 
 		 662 aa  44.3  0.003  Trichodesmium erythraeum IMS101  Bacteria  normal  1  normal  0.580114 
 
 
-
 
NC_010498  EcSMS35_2801  glycine betaine transporter periplasmic subunit  25.73 
 
 		 330 aa  43.9  0.004  Escherichia coli SMS-3-5  Bacteria  normal  0.56693  normal  0.0222237 
 
 
-
 
NC_004578  PSPTO_3058  glycine betaine ABC transporter, periplasmic glycine betaine-binding protein  25.33 
 
 		 325 aa  43.5  0.005  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.302341  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>