Gene Spea_0257 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_0257 
Symbol 
ID5660657 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand- 
Start bp287555 
End bp288559 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content48% 
IMG OID641234787 
Productsubstrate-binding region of ABC-type glycine betaine transport system 
Protein accessionYP_001500120 
Protein GI157960086 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACGTA TACTTTTGAT TGGTGGCCTA CTTCTTAGCA GCGTAACACA CCAAACCTTT 
GCCGAAGAAC GATGCGGCAA AGTCACTATC GCTGATATGA ATTGGAGCTC CGCTTCATTA 
ATCGCGAATG TTGACCGCTT TATTTTAGAG CATGGTTATG ACTGTGAAGC CGAGTTAATT 
CCAGGCGATA CCATGCCCAC CAGCACTTCG ATGGTTGAAA AAGGAGAGCC TGATATCGCC 
CCAGAAATCT GGAGTAACAG CGTCAAAGAA CTTATCGAAA AAGCAGTCAA TGATAAGCGC 
TTAATTATCG CAGGTAACTC GCTATCCGAT GGTGGTGAAG AAGGCTTCTG GGTTCCGCAG 
TACATGGTCG ACAAAGATCC TAGCCTGAAA ACCATTCAGG GAGTCATAGC CAATGTAAAA 
ACCTTTGAGC ACCCAGAAGA TCCTGATCGT GGTGCCTTTT ATGGATGCCC TGCTGGCTGG 
GGTTGCCAAC TATCTGCAGA AAACCTGTTT CGCGCACTCA AGCTCGGTGA TGCTGGATTT 
GATCTTATCG ATCCCGGTTC AGGAGCCGGT CTTGCTGGTT CTATTGCCCG AGCTTACGAA 
CGCCAACAAC CTTGGTTTGG CTACTATTGG GCCCCCACCG CTGTATTAGG TAAGTACAAA 
ATGGTCAAAG TGGACTTTGG TAGCGGTGTT GATACAGAGC ATTTTCGCGA CTGCACCTCT 
CAAGTAGAGT GTGCCGCCCC TAAGGTCACC ATGTACCCAG CTGCATTAGT GCAGACGGTC 
ACCACCGCAG CATTCGCAGA CAAATCAACC TCGGCATTCA AATACCTTAG TAAACGCGCC 
TTGACCAATG CGCAGATGAA CAGCTTACTG GCGTGGATGG AGAACAATCA GGCTGATGGC 
ACTATCGCTG CCGAATATTT CCTAATCAAT CATCAAGATA TTTGGCTTGA ATGGGTTCCA 
GCTAACGTCG CCACAAAAGT GAAGCTGGCT ATCGCAAACC TATAA
 
Protein sequence
MKRILLIGGL LLSSVTHQTF AEERCGKVTI ADMNWSSASL IANVDRFILE HGYDCEAELI 
PGDTMPTSTS MVEKGEPDIA PEIWSNSVKE LIEKAVNDKR LIIAGNSLSD GGEEGFWVPQ 
YMVDKDPSLK TIQGVIANVK TFEHPEDPDR GAFYGCPAGW GCQLSAENLF RALKLGDAGF 
DLIDPGSGAG LAGSIARAYE RQQPWFGYYW APTAVLGKYK MVKVDFGSGV DTEHFRDCTS 
QVECAAPKVT MYPAALVQTV TTAAFADKST SAFKYLSKRA LTNAQMNSLL AWMENNQADG 
TIAAEYFLIN HQDIWLEWVP ANVATKVKLA IANL