More than 300 homologs were found in PanDaTox collection
for query gene PsycPRwf_1376 on replicon NC_009524
Organism: Psychrobacter sp. PRwf-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009524  PsycPRwf_1376  substrate-binding region of ABC-type glycine betaine transport system  100 
 
 
652 aa  1334    Psychrobacter sp. PRwf-1  Bacteria  normal  hitchhiker  0.000369923 
 
 
-
 
NC_007969  Pcryo_1086  substrate-binding region of ABC-type glycine betaine transport system  74.47 
 
 
646 aa  915    Psychrobacter cryohalolentis K5  Bacteria  normal  0.809733  normal  0.592465 
 
 
-
 
NC_009719  Plav_1066  substrate-binding region of ABC-type glycine betaine transport system  41.76 
 
 
633 aa  439  9.999999999999999e-123  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5829  ABC transporter permease  57.55 
 
 
283 aa  306  6e-82  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_67280  ABC transporter permease  57.55 
 
 
283 aa  306  1.0000000000000001e-81  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2844  ABC proline/glycine betaine transporter, inner membrane subunit  57.14 
 
 
321 aa  304  3.0000000000000004e-81  Burkholderia sp. 383  Bacteria  normal  normal  0.852577 
 
 
-
 
NC_004578  PSPTO_5272  histidine ABC transporter, permease protein, putative  57.71 
 
 
283 aa  303  5.000000000000001e-81  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4830  binding-protein dependent transport system inner membrane protein  57.71 
 
 
283 aa  303  5.000000000000001e-81  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.865615 
 
 
-
 
NC_007492  Pfl01_0363  binding-protein dependent transport system inner membrane protein  56.99 
 
 
283 aa  303  7.000000000000001e-81  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2845  ABC proline/glycine betaine transporter, periplasmic ligand binding protein  47.95 
 
 
345 aa  290  8e-77  Burkholderia sp. 383  Bacteria  normal  normal  0.894091 
 
 
-
 
NC_009832  Spro_0801  binding-protein-dependent transport systems inner membrane component  55.52 
 
 
281 aa  271  2e-71  Serratia proteamaculans 568  Bacteria  normal  0.730123  normal  0.990887 
 
 
-
 
NC_007492  Pfl01_4344  substrate-binding region of ABC-type glycine betaine transport system  42.35 
 
 
337 aa  271  2.9999999999999997e-71  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3319  substrate-binding region of ABC-type glycine betaine transport system  43.25 
 
 
337 aa  264  4.999999999999999e-69  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2362  binding-protein-dependent transport systems inner membrane component  55 
 
 
282 aa  263  6.999999999999999e-69  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2215  binding-protein-dependent transport systems inner membrane component  54.8 
 
 
282 aa  262  1e-68  Pseudomonas putida F1  Bacteria  normal  0.636525  normal 
 
 
-
 
NC_007005  Psyr_3778  substrate-binding region of ABC-type glycine betaine transport system  41.18 
 
 
337 aa  262  2e-68  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.110017 
 
 
-
 
NC_009636  Smed_2584  binding-protein-dependent transport systems inner membrane component  52.16 
 
 
285 aa  260  4e-68  Sinorhizobium medicae WSM419  Bacteria  normal  0.320123  normal  0.13296 
 
 
-
 
NC_008254  Meso_2542  binding-protein-dependent transport systems inner membrane component  48.24 
 
 
300 aa  256  7e-67  Chelativorans sp. BNC1  Bacteria  normal  0.287103  n/a   
 
 
-
 
NC_002947  PP_3559  binding-protein-dependent transport systems inner membrane component  54.45 
 
 
299 aa  251  3e-65  Pseudomonas putida KT2440  Bacteria  normal  0.873064  normal 
 
 
-
 
NC_009636  Smed_2583  substrate-binding region of ABC-type glycine betaine transport system  39.13 
 
 
344 aa  249  1e-64  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.201596 
 
 
-
 
NC_008463  PA14_67400  putative ABC transporter, periplasmic substrate-binding protein  40.35 
 
 
340 aa  248  2e-64  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2047  binding-protein-dependent transport systems inner membrane component  48.36 
 
 
282 aa  248  3e-64  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000739779  decreased coverage  0.0000000000305889 
 
 
-
 
NC_004578  PSPTO_1600  ABC transporter, periplasmic substrate-binding protein, putative  41.96 
 
 
337 aa  248  3e-64  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.865849  n/a   
 
 
-
 
NC_009439  Pmen_0486  binding-protein-dependent transport systems inner membrane component  47.78 
 
 
294 aa  246  6.999999999999999e-64  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1284  binding-protein-dependent transport systems inner membrane component  51.28 
 
 
279 aa  243  6e-63  Meiothermus ruber DSM 1279  Bacteria  normal  0.437993  normal  0.22836 
 
 
-
 
NC_011368  Rleg2_4909  binding-protein-dependent transport systems inner membrane component  45.73 
 
 
295 aa  243  1e-62  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.206817  normal 
 
 
-
 
NC_009784  VIBHAR_06563  glycine betaine/L-proline ABC transporter permease protein  45.39 
 
 
299 aa  242  2e-62  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008786  Veis_4060  binding-protein-dependent transport systems inner membrane component  47.45 
 
 
290 aa  242  2e-62  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0808444  normal  0.400177 
 
 
-
 
NC_009656  PSPA7_5836  hypothetical protein  39.94 
 
 
356 aa  241  2.9999999999999997e-62  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4821  binding-protein-dependent transport systems inner membrane component  42.47 
 
 
295 aa  241  4e-62  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4829  substrate-binding region of ABC-type glycine betaine transport system  38.49 
 
 
322 aa  240  6.999999999999999e-62  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.93299 
 
 
-
 
NC_008782  Ajs_1064  binding-protein-dependent transport systems inner membrane component  45.55 
 
 
400 aa  239  1e-61  Acidovorax sp. JS42  Bacteria  normal  0.0842907  normal 
 
 
-
 
NC_004578  PSPTO_5271  histidine transporter, periplasmic histidine-binding protein  38.49 
 
 
322 aa  238  2e-61  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3888  binding-protein-dependent transport systems inner membrane component  53.16 
 
 
301 aa  239  2e-61  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2363  substrate-binding region of ABC-type glycine betaine transport system  38.27 
 
 
338 aa  239  2e-61  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3558  substrate-binding region of ABC-type glycine betaine transport system  38.21 
 
 
338 aa  238  3e-61  Pseudomonas putida KT2440  Bacteria  normal  0.561868  normal 
 
 
-
 
NC_011992  Dtpsy_0980  binding-protein-dependent transport systems inner membrane component  45.55 
 
 
400 aa  238  3e-61  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0802  substrate-binding region of ABC-type glycine betaine transport system  38.17 
 
 
321 aa  238  3e-61  Serratia proteamaculans 568  Bacteria  normal  0.0332812  normal 
 
 
-
 
NC_013457  VEA_000686  L-proline Glycine Betaine ABC transport system permease protein proW  44.71 
 
 
299 aa  238  3e-61  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_2216  substrate-binding region of ABC-type glycine betaine transport system  37.91 
 
 
338 aa  236  9e-61  Pseudomonas putida F1  Bacteria  normal  0.228946  normal 
 
 
-
 
NC_008346  Swol_1736  binding-protein-dependent transport systems inner membrane component  50 
 
 
283 aa  235  2.0000000000000002e-60  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.000000490097  n/a   
 
 
-
 
NC_008686  Pden_0946  binding-protein-dependent transport systems inner membrane component  44.52 
 
 
296 aa  235  2.0000000000000002e-60  Paracoccus denitrificans PD1222  Bacteria  decreased coverage  0.00558212  normal 
 
 
-
 
NC_008686  Pden_1194  binding-protein-dependent transport systems inner membrane component  44.52 
 
 
296 aa  235  2.0000000000000002e-60  Paracoccus denitrificans PD1222  Bacteria  normal  0.987878  normal 
 
 
-
 
NC_008687  Pden_3857  binding-protein-dependent transport systems inner membrane component  45.86 
 
 
293 aa  234  3e-60  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.215076 
 
 
-
 
NC_004311  BRA0739  glycine betaine/L-proline ABC transporter, permease protein, putative  46.97 
 
 
301 aa  234  4.0000000000000004e-60  Brucella suis 1330  Bacteria  normal  0.483672  n/a   
 
 
-
 
NC_009504  BOV_A0691  putative glycine betaine/L-proline ABC transporter, permease protein  46.62 
 
 
299 aa  234  4.0000000000000004e-60  Brucella ovis ATCC 25840  Bacteria  normal  0.18849  n/a   
 
 
-
 
NC_008463  PA14_67300  putative binding protein component of ABC transporter  37.54 
 
 
322 aa  234  5e-60  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5830  ABC transporter periplasmic binding protein  38.8 
 
 
322 aa  233  6e-60  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6869  binding-protein-dependent transport systems inner membrane component  46.56 
 
 
294 aa  232  1e-59  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0733  binding-protein-dependent transport systems inner membrane component  45.76 
 
 
282 aa  233  1e-59  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2692  binding-protein-dependent transport systems inner membrane component  47.6 
 
 
317 aa  231  2e-59  Pseudomonas putida GB-1  Bacteria  normal  0.565238  normal  0.807022 
 
 
-
 
NC_007355  Mbar_A2377  glycine betaine/L-proline ABC transporter, permease  47.67 
 
 
274 aa  231  2e-59  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.336492 
 
 
-
 
NC_007650  BTH_II0967  glycine betaine/L-proline ABC transporter, permease protein, putative  46.99 
 
 
300 aa  231  2e-59  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1902  binding-protein-dependent transport systems inner membrane component  44.98 
 
 
276 aa  231  2e-59  Chromohalobacter salexigens DSM 3043  Bacteria  decreased coverage  0.00849188  n/a   
 
 
-
 
NC_008751  Dvul_0957  binding-protein-dependent transport systems inner membrane component  49.38 
 
 
283 aa  232  2e-59  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.000687252  normal  0.263014 
 
 
-
 
NC_010623  Bphy_3449  choline ABC transporter, permease protein  46.24 
 
 
301 aa  231  4e-59  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_003296  RS02042  transmembrane ABC transporter protein  44.01 
 
 
298 aa  230  5e-59  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2476  binding-protein dependent transport system inner membrane protein  45.36 
 
 
357 aa  229  9e-59  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2667  binding-protein-dependent transport systems inner membrane component  45.42 
 
 
399 aa  229  1e-58  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00496589  normal 
 
 
-
 
NC_012791  Vapar_2520  binding-protein-dependent transport systems inner membrane component  44 
 
 
383 aa  229  1e-58  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1932  glycine betaine/L-proline ABC transporter, permease protein  46.99 
 
 
300 aa  228  2e-58  Burkholderia pseudomallei 1106a  Bacteria  normal  0.738925  n/a   
 
 
-
 
NC_009079  BMA10247_A1869  glycine betaine/L-proline ABC transporter, permease protein  46.99 
 
 
300 aa  228  2e-58  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0902  glycine betaine/L-proline ABC transporter, permease protein  46.99 
 
 
300 aa  228  2e-58  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0565  putative glycine betaine/L-proline ABC transporter, permease protein  46.99 
 
 
300 aa  228  2e-58  Burkholderia mallei ATCC 23344  Bacteria  normal  0.120464  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0449  glycine betaine/L-proline ABC transporter, permease protein  46.99 
 
 
300 aa  228  2e-58  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2026  glycine betaine/L-proline ABC transporter, permease protein  46.99 
 
 
300 aa  228  2e-58  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_5761  binding-protein-dependent transport systems inner membrane component  47.33 
 
 
295 aa  228  2e-58  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003610  L-proline Glycine Betaine ABC transport system permease protein proW  46.27 
 
 
363 aa  228  3e-58  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4236  putative permease  43.93 
 
 
299 aa  227  4e-58  Shewanella sediminis HAW-EB3  Bacteria  normal  0.886971  unclonable  0.0000000000487453 
 
 
-
 
NC_009901  Spea_0256  binding-protein-dependent transport systems inner membrane component  43.26 
 
 
299 aa  227  5.0000000000000005e-58  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_5091  choline ABC transporter, permease protein  46.24 
 
 
298 aa  227  6e-58  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.674099 
 
 
-
 
NC_008391  Bamb_4566  binding-protein-dependent transport systems inner membrane component  46.24 
 
 
298 aa  227  6e-58  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.669781 
 
 
-
 
NC_009436  Ent638_3158  glycine betaine transporter membrane protein  43.68 
 
 
355 aa  226  7e-58  Enterobacter sp. 638  Bacteria  normal  0.363018  normal 
 
 
-
 
NC_012917  PC1_3321  glycine betaine transporter membrane protein  42.86 
 
 
422 aa  226  1e-57  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3734  glycine betaine transporter membrane protein  42.7 
 
 
374 aa  226  1e-57  Serratia proteamaculans 568  Bacteria  normal  normal  0.346583 
 
 
-
 
NC_007348  Reut_B4810  binding-protein dependent transport system inner membrane protein  45.49 
 
 
298 aa  226  1e-57  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0362  substrate-binding region of ABC-type glycine betaine transport system  36.98 
 
 
322 aa  226  1e-57  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.376501  normal 
 
 
-
 
NC_013440  Hoch_5465  binding-protein-dependent transport systems inner membrane component  43.84 
 
 
281 aa  226  1e-57  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.112319 
 
 
-
 
NC_008061  Bcen_3196  binding-protein-dependent transport systems inner membrane component  46.24 
 
 
298 aa  226  1e-57  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5171  binding-protein-dependent transport systems inner membrane component  46.24 
 
 
298 aa  226  1e-57  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.00870989  normal  0.647601 
 
 
-
 
NC_010515  Bcenmc03_5108  choline ABC transporter, permease protein  46.24 
 
 
298 aa  226  1e-57  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_3486  choline ABC transporter, permease protein  45.86 
 
 
298 aa  225  2e-57  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.180465 
 
 
-
 
NC_009708  YpsIP31758_1060  glycine betaine transporter membrane protein  42.6 
 
 
388 aa  225  2e-57  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3059  glycine betaine/L-proline ABC transporter, permease protein  43.93 
 
 
321 aa  225  2e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.206387  n/a   
 
 
-
 
NC_010465  YPK_1114  glycine betaine transporter membrane protein  42.6 
 
 
388 aa  225  2e-57  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3535  glycine betaine transporter membrane protein  42.6 
 
 
388 aa  225  2e-57  Yersinia pestis Angola  Bacteria  normal  0.872834  normal  0.0140856 
 
 
-
 
NC_009943  Dole_2764  binding-protein-dependent transport systems inner membrane component  44.19 
 
 
278 aa  224  4e-57  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0116658  n/a   
 
 
-
 
NC_013421  Pecwa_3477  glycine betaine transporter membrane protein  42.12 
 
 
400 aa  224  4.9999999999999996e-57  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1846  binding-protein-dependent transport systems inner membrane component  41.14 
 
 
298 aa  224  4.9999999999999996e-57  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00873954  hitchhiker  0.00370513 
 
 
-
 
NC_009636  Smed_0651  binding-protein-dependent transport systems inner membrane component  45.24 
 
 
295 aa  224  4.9999999999999996e-57  Sinorhizobium medicae WSM419  Bacteria  normal  0.938686  normal  0.21928 
 
 
-
 
NC_007511  Bcep18194_B0456  ABC glycine betaine/L-proline transporter, inner membrane subunit  45.49 
 
 
298 aa  223  7e-57  Burkholderia sp. 383  Bacteria  normal  0.424903  normal  0.0286043 
 
 
-
 
NC_008312  Tery_4110  substrate-binding region of ABC-type glycine betaine transport system  45.05 
 
 
662 aa  223  8e-57  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.580114 
 
 
-
 
NC_008752  Aave_1496  binding-protein-dependent transport systems inner membrane component  43.01 
 
 
451 aa  223  9e-57  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0787924  normal  0.370511 
 
 
-
 
NC_008527  LACR_1541  ABC-type proline/glycine betaine transport system, permease component  45.63 
 
 
573 aa  223  9.999999999999999e-57  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.11623  n/a   
 
 
-
 
NC_004116  SAG1796  amino acid ABC transporter, permease protein  41.35 
 
 
575 aa  222  1.9999999999999999e-56  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.135141  n/a   
 
 
-
 
NC_012912  Dd1591_0864  glycine betaine transporter membrane protein  42.45 
 
 
400 aa  222  1.9999999999999999e-56  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2309  binding-protein-dependent transport systems inner membrane component  44.29 
 
 
279 aa  222  1.9999999999999999e-56  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0079247  n/a   
 
 
-
 
NC_011769  DvMF_1044  binding-protein-dependent transport systems inner membrane component  46.52 
 
 
280 aa  222  1.9999999999999999e-56  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008254  Meso_2543  substrate-binding region of ABC-type glycine betaine transport system  37.5 
 
 
342 aa  222  1.9999999999999999e-56  Chelativorans sp. BNC1  Bacteria  normal  0.221502  n/a   
 
 
-
 
NC_009253  Dred_3208  binding-protein-dependent transport systems inner membrane component  44.32 
 
 
278 aa  222  1.9999999999999999e-56  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0667053  n/a   
 
 
-
 
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