Gene PSPTO_5272 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5272 
Symbol 
ID1186957 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp5995043 
End bp5995894 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content61% 
IMG OID637396591 
Producthistidine ABC transporter, permease protein, putative 
Protein accessionNP_795003 
Protein GI28872384 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4176] ABC-type proline/glycine betaine transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTCCTG AAAGCTTCAC TTTCTCGATC GCCAACTGGG TCAACGACGG GGTCGACTCG 
CTGGTGACTC AGTATGGCGA CGTGTTCCGG CACATCTCCG AGACCCTGCT GTGGGCTATC
GTCAACCTCG AAGGCCTGCT GCGCATGGCC CCGTGGTGGC TGATGCTGAT CATCGTCGGC
GGTATCGCCT GGCACGCGAC GCGCAAAATC ATCACGACGC TGGTGATCGT CGGCCTGCTG
TTTCTGGTCG GCGCGGTCGG GTTGTGGGAC AAGCTGATGC AGACACTGGC GCTGATGCTG
GTCGCCACGA TCATTGCGGT GCTGATCGGC ATTCCACTGG GCATTCTCTC GGCGCGCAGT
AATCGCCTGC GCTCGGTGCT GATGCCGCTG CTGGACATCA TGCAGACCAT GCCCAGCTTC
GTTTATCTGA TTCCGGTGCT GATGCTGTTC GGTTTGGGCA AGGTCCCGGC CATCTTCGCC
ACCGTGATCT ATGCCGCGCC GCCGCTGATT CGCCTGACTG ATCTGGGCAT TCGTCAGGTC
GATGGCGAAG TGATGGAAGC GATCAACGCC TTCGGCGCCA ATCGCTGGCA GCAACTGTTC
GGCGTGCAAC TGCCGCTGGC CATGCCGAGC ATCATGGCTG GCATCAACCA GACCACCATG
ATGGCGCTGT CGATGGTGGT CATCGCCTCG ATGATCGGCG CACGCGGGCT GGGCGAGGAT
GTGCTGGTAG GCATTCAGAC CCTCAACGTC GGACGCGGGC TGGAAGCCGG CCTTGCCATC
GTCATTCTGG CGGTCGTCAT CGACCGAATC ACGCAGGCCT ATGGCCGCCC ACGGCATGAG
GCGCACAAAT GA
 
Protein sequence
MFPESFTFSI ANWVNDGVDS LVTQYGDVFR HISETLLWAI VNLEGLLRMA PWWLMLIIVG 
GIAWHATRKI ITTLVIVGLL FLVGAVGLWD KLMQTLALML VATIIAVLIG IPLGILSARS
NRLRSVLMPL LDIMQTMPSF VYLIPVLMLF GLGKVPAIFA TVIYAAPPLI RLTDLGIRQV
DGEVMEAINA FGANRWQQLF GVQLPLAMPS IMAGINQTTM MALSMVVIAS MIGARGLGED
VLVGIQTLNV GRGLEAGLAI VILAVVIDRI TQAYGRPRHE AHK