Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5272 |
Symbol | |
ID | 1186957 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5995043 |
End bp | 5995894 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637396591 |
Product | histidine ABC transporter, permease protein, putative |
Protein accession | NP_795003 |
Protein GI | 28872384 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTCCTG AAAGCTTCAC TTTCTCGATC GCCAACTGGG TCAACGACGG GGTCGACTCG CTGGTGACTC AGTATGGCGA CGTGTTCCGG CACATCTCCG AGACCCTGCT GTGGGCTATC GTCAACCTCG AAGGCCTGCT GCGCATGGCC CCGTGGTGGC TGATGCTGAT CATCGTCGGC GGTATCGCCT GGCACGCGAC GCGCAAAATC ATCACGACGC TGGTGATCGT CGGCCTGCTG TTTCTGGTCG GCGCGGTCGG GTTGTGGGAC AAGCTGATGC AGACACTGGC GCTGATGCTG GTCGCCACGA TCATTGCGGT GCTGATCGGC ATTCCACTGG GCATTCTCTC GGCGCGCAGT AATCGCCTGC GCTCGGTGCT GATGCCGCTG CTGGACATCA TGCAGACCAT GCCCAGCTTC GTTTATCTGA TTCCGGTGCT GATGCTGTTC GGTTTGGGCA AGGTCCCGGC CATCTTCGCC ACCGTGATCT ATGCCGCGCC GCCGCTGATT CGCCTGACTG ATCTGGGCAT TCGTCAGGTC GATGGCGAAG TGATGGAAGC GATCAACGCC TTCGGCGCCA ATCGCTGGCA GCAACTGTTC GGCGTGCAAC TGCCGCTGGC CATGCCGAGC ATCATGGCTG GCATCAACCA GACCACCATG ATGGCGCTGT CGATGGTGGT CATCGCCTCG ATGATCGGCG CACGCGGGCT GGGCGAGGAT GTGCTGGTAG GCATTCAGAC CCTCAACGTC GGACGCGGGC TGGAAGCCGG CCTTGCCATC GTCATTCTGG CGGTCGTCAT CGACCGAATC ACGCAGGCCT ATGGCCGCCC ACGGCATGAG GCGCACAAAT GA
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Protein sequence | MFPESFTFSI ANWVNDGVDS LVTQYGDVFR HISETLLWAI VNLEGLLRMA PWWLMLIIVG GIAWHATRKI ITTLVIVGLL FLVGAVGLWD KLMQTLALML VATIIAVLIG IPLGILSARS NRLRSVLMPL LDIMQTMPSF VYLIPVLMLF GLGKVPAIFA TVIYAAPPLI RLTDLGIRQV DGEVMEAINA FGANRWQQLF GVQLPLAMPS IMAGINQTTM MALSMVVIAS MIGARGLGED VLVGIQTLNV GRGLEAGLAI VILAVVIDRI TQAYGRPRHE AHK
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