| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4566 |
|---|
| Symbol | |
|---|
| ID | 4313458 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 1517492 |
|---|
| End bp | 1518388 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638152405 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_776450 |
|---|
| Protein GI | 115359312 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
|---|
| TIGRFAM ID | [TIGR03416] choline ABC transporter, permease protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.669781 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAA TGATTCCGCT CGGTACCTGG GTCGACCGGT CCGTTCACTA CCTGCTCGAC
CATGACGCGG CAACGTTCGA TGCGATCGGC CGCGCGATCG AGGGCCTCGC CGCGTTCGTC
GAGCACGGAC TGCAGGCGAT CCCGATGTGG CTGATGATGG CGATCTTCAT CGGCGTCGGA
CTGTGGCGCG TGGGCTGGCG CTTCGCGCTG TTCACCACCT TGTCGCTGCT GCTGATCTTC
GCGACGGGCT TCTGGGATCA GACGGTCATC ACGCTCGGTC TCACGCTGTC GTCGACGATC
ATCAGCCTCG TGCTCGGCAT TCCGCTCGGC ATCTGGGCCG CGAAGAGCAA GCTGGTCGCC
GCGATCGTGC GTCCGATCCT CGACCTGATG CAGACGATGC CTGCGTTCGT CTACCTGATT
CCGGCCGCGA TGCTGTTCGG TCTCGGCCGC GTGCCGGGGA TCCTGTCGAC GGTGATCTTC
GCGATGCCGC CGGCCGTGCG CCTGACGAGC CTCGGCATCC GTCACGTGAA CCGCGAGATC
GTCGAAGCCG GCCAGGCATT CGGCTGCACG CCGTGGCAGC TGCTGTACAA GGTGCAGTTC
CCGAATGCGC TGCCGTCGAT CATGCAGGGC GTGAACCAGA CGATCATGAT GGCGCTGTCG
ATGGTCATCA TCGCATCGAT GGTCGGCGCG GGCGGCCTCG GCAACGATGT GCTCGCGAGT
ATCCAGCGCC TCGACATCGG CCTCGGTTTC GAAAGCGGTC TGTCGGTCGT GCTGCTCGCG
ATCATTCTCG ACCGCATCAC CGAAAGCTTC GGCCGCGCGC CGGGCACCGT GAAAGCACCG
CTCTTCTCGG GCCTGAAGCA GGTGTTCCGC GCGAAGGGCG CTCCCGCTCA AGCCTGA
|
|---|
| Protein sequence | MSEMIPLGTW VDRSVHYLLD HDAATFDAIG RAIEGLAAFV EHGLQAIPMW LMMAIFIGVG
LWRVGWRFAL FTTLSLLLIF ATGFWDQTVI TLGLTLSSTI ISLVLGIPLG IWAAKSKLVA
AIVRPILDLM QTMPAFVYLI PAAMLFGLGR VPGILSTVIF AMPPAVRLTS LGIRHVNREI
VEAGQAFGCT PWQLLYKVQF PNALPSIMQG VNQTIMMALS MVIIASMVGA GGLGNDVLAS
IQRLDIGLGF ESGLSVVLLA IILDRITESF GRAPGTVKAP LFSGLKQVFR AKGAPAQA
|
|---|
| |