Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_0946 |
Symbol | |
ID | 4579657 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | + |
Start bp | 928843 |
End bp | 929733 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639768267 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_914753 |
Protein GI | 119383697 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00558212 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACATCGT GGCTCACGTC CTTTCCCCAA TTGAGCGATT CCCTGCTGCG CGCGCTGCAG CGCAGCATCG ACAACGGTTT CCGCAGCTTC ACCCGCAGCT ACGGCGACCT GATCGAGGGC TTCTTCAGCC CCTTGCAGAC CCTGCTGATC TGGTTCGAGC GGCTGCTTCT GGGCACGCCC TGGCCGGTGA TCCTGCTGGT CGTGGCCGGC CTGGCCTGGG GCGCCAGCCG CAGCCTGCGG GTGGTGATCG GCTCGGTCCT GACGCTGGTG CTGATCGGGC TGTTCGGCAT GTGGGCCGAC ACCATGAAGA CCATCTCGAT GGTGCTGGCC GCGACGCTCC TGTCGATCGC CATCGGCCTG CCGCTGGGGG TGCTGATGGC GCGCTCGGCC CGGGTGCAGC GGGTCGTCAG CCCGATCCTG GACATCATGC AGACCATGCC CAGCTTCGTC TACCTGATCC CGGTGGTGAT GCTTCTGGGC ATCGGCCGGG TGCCGGGGCT GATCGCGGTG GTGATCTATG CGCTGCCGCC GATGATCCGG CTGACCAACC TGGGCATCCG CCAGGTCGAT CCCGAGGTGC TGGAGGCCAC CGACGCCTTC GGCTCCTCCG CCTGGCAGAA GCTGGTCAAG GCGCAGCTGC CGCTGGCGCT GCCCACGATC ATGGCCGGGA TCAACCAGAC CATCATGATG GCGCTGGCCA TGGTGGTGAT CGCCTCGATG ATCGGGGTGC AGGGGCTGGG CCAGCCGGTG CTGCGGGCGA TCTCGAACCA GTATTTCACG CTGGGGCTGT TCAACGGCTT CGCCATCGTC GGCATCGCCA TCCTCTTCGA CCGCATCAGC CAGGCCTGGG GCAAGCGGCT GCAGAAACAT CGCGAGGCCA GCCATGACTG A
|
Protein sequence | MTSWLTSFPQ LSDSLLRALQ RSIDNGFRSF TRSYGDLIEG FFSPLQTLLI WFERLLLGTP WPVILLVVAG LAWGASRSLR VVIGSVLTLV LIGLFGMWAD TMKTISMVLA ATLLSIAIGL PLGVLMARSA RVQRVVSPIL DIMQTMPSFV YLIPVVMLLG IGRVPGLIAV VIYALPPMIR LTNLGIRQVD PEVLEATDAF GSSAWQKLVK AQLPLALPTI MAGINQTIMM ALAMVVIASM IGVQGLGQPV LRAISNQYFT LGLFNGFAIV GIAILFDRIS QAWGKRLQKH REASHD
|
| |