| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2520 |
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| Symbol | |
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| ID | 7969997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2660395 |
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| End bp | 2661546 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793107 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002944412 |
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| Protein GI | 239815502 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGACA ACACACTTCC TTCCGACCTG AGCACGCCCG CAACTCCCGC CTTCGCCGAT
CCGTGGGAAG CGCTCTCTGC CGCGCCCGAC ACCTCGGCCA CCAGCGCCTG GCTCGATGCG
CCCGCCGACG CGGCCCACCA GCTGGCCGGC TCGGCCGATG CCACGGCCAG CGGCTTGCAG
CTGCACCGCC TGTGGGACGG CTCCCTGCCC GTCGAATCCT GGATCAACCA GGGCCTCGGC
TGGGTGGTCG AGCATTTCCG CCCCTTCTTC CAGACCCTGC GCCTGCCCAT CGACAGCACG
CTGAACTGGG TCCAGGGCCT GCTGACCGGC CTGCCGACGC TCGCGATGAT CGCGCTGATC
GGCCTCTTCG CCTGGCAGTT CGCCGGCCGT GCGCTGGCCA TCGGCACCAC GGCGGCGCTG
CTGCTCGTGG CCATGCTGGG CATCTGGCCC GAGGCGATGG TGACGCTGTC GCTGGTGCTG
ACCTCGCTGG TGTTCTGCAT GATCATCGGC CTGCCGCTCG GCGTGCTGCT GGCCAGCAGC
GACCGCGCGC AGCGCCTCAT GCGCCCGGTG CTCGACGCGA TGCAGACCAC GCCCGCCTTC
GTCTACCTGG TGCCGGTGGT GATGCTGTTC GGCATCGGCA ACGTGCCGGG CGTGATCGTG
ACCATCATCT TCGCGCTGGC GCCGCTGGTG CGCCTGACCA ACCTGGGCCT GCGCCAGGTG
CGGCCCGACC TGATCGAGGC CGCGCGCGCC TACGGCGCCT CGCCCTGGCA GATGCTCGTG
AAGGTGCAGC TGCCGCTGGC CATGCCTTCG ATCATGGCGG GCATCAACCA GGCGCTGATG
CTGTCGCTGT CGATGGTGGT GATCGCCTCG ATGATCGCCG TCGGCGGCCT GGGCCAGATG
GTGCTGCGCG GCATCGGCCG GCTCGACATG GGCCTCGCGA CCGTGGGCGG CCTGGGCATC
GTGCTGCTGG CGATCTCGCT CGACCGGCTC ACGCAGGCCA TGGGCAAGTC GCGCCGCAGC
GCCGGGCGCC GCTGGTGGCA CACCGGGCCG GCCGGCCTGG CGCTGCGCCT GCTGCAGCGC
CTCGTGGGTA CGCCGCCCCG CGGTGACGGT GCGAACGAGC CCGTTCCCGC CCTCGCCACG
CAAGCGCAAT GA
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| Protein sequence | MNDNTLPSDL STPATPAFAD PWEALSAAPD TSATSAWLDA PADAAHQLAG SADATASGLQ
LHRLWDGSLP VESWINQGLG WVVEHFRPFF QTLRLPIDST LNWVQGLLTG LPTLAMIALI
GLFAWQFAGR ALAIGTTAAL LLVAMLGIWP EAMVTLSLVL TSLVFCMIIG LPLGVLLASS
DRAQRLMRPV LDAMQTTPAF VYLVPVVMLF GIGNVPGVIV TIIFALAPLV RLTNLGLRQV
RPDLIEAARA YGASPWQMLV KVQLPLAMPS IMAGINQALM LSLSMVVIAS MIAVGGLGQM
VLRGIGRLDM GLATVGGLGI VLLAISLDRL TQAMGKSRRS AGRRWWHTGP AGLALRLLQR
LVGTPPRGDG ANEPVPALAT QAQ
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