| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0486 |
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| Symbol | |
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| ID | 5108405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 520819 |
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| End bp | 521703 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640501699 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001185988 |
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| Protein GI | 146305523 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
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| TIGRFAM ID | [TIGR03416] choline ABC transporter, permease protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGACA AGAAACTCGA CCTGGGCAGC TGGGTCAACG ACGTGGTCCA GCATCTGCTG
GACAACTACA GCGGCGCCTT CGACAGCATC GGCAAGCTGG TCAGCGGCTT CTCCGAGGGT
ATCGAGAACC TGCTGATGCT GCCGCCGGCC TGGCTGCTCA TCGCCATCTT CGTCGGCCTC
GGCCTGTGGC GCATCGGCAT GCGCTTCGCG GTCTTCACCG CGGTGGCCTT CATCCTCATC
GTCATGACCG GCTTCTGGGA GCAGACCGTG GTCACCCTCG GCCTGACCTT CTCCTCCACC
CTGATCAGTC TGCTGCTGGG CATCCCGCTG GGCATCTGGG CAGCCAAGAG CGAGCGCGTG
GCCACCATCA TTCGGCCGGT GCTCGACTTC ATGCAGACCA TGCCGGCCTT CGTCTACCTG
ATCCCGGCGG CCATGCTGTT CGGTCTCGGC CGCGTCCCCG GCATCATCGC CACGGTGATC
TTCGCCATGC CGCCGGCCGT GCGTCTGACC AGCCTGGGGA TTCGCCAGGT GAACAAGGAA
ATCGTCGAGG CGGGCCAGTC CTTCGGCTGC ACCAGCCGCC AGCTGCTGTT CAAGGTGCAG
CTGCCCAACG CCATGCCGTC GATCATGGCC GGGGTCAACC AGACCATCAT GATGGCCCTG
TCGATGGTGA TCATCGCCTC GATGGTGGGC GCCGGCGGCC TGGGCAACGA TGTGCTGGCG
AGCATTCAAC GTCTGGACAT CGGGCTAGGC TTCGAGAGTG GCATGGCCGT GGTGCTGCTG
GCGATCATCC TCGACCGCAT CACCGAGAGT TTCGGCACCA AGCAGACCGC CAAGCGTGGC
GTGTTCGCCT GGTTCAGCGG CAAGCTGCAG CGCCAGTCCT CCTAA
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| Protein sequence | MSDKKLDLGS WVNDVVQHLL DNYSGAFDSI GKLVSGFSEG IENLLMLPPA WLLIAIFVGL
GLWRIGMRFA VFTAVAFILI VMTGFWEQTV VTLGLTFSST LISLLLGIPL GIWAAKSERV
ATIIRPVLDF MQTMPAFVYL IPAAMLFGLG RVPGIIATVI FAMPPAVRLT SLGIRQVNKE
IVEAGQSFGC TSRQLLFKVQ LPNAMPSIMA GVNQTIMMAL SMVIIASMVG AGGLGNDVLA
SIQRLDIGLG FESGMAVVLL AIILDRITES FGTKQTAKRG VFAWFSGKLQ RQSS
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