Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_5091 |
Symbol | |
ID | 6179369 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | - |
Start bp | 2258987 |
End bp | 2259883 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641684843 |
Product | choline ABC transporter, permease protein |
Protein accession | YP_001811753 |
Protein GI | 172064102 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
TIGRFAM ID | [TIGR03416] choline ABC transporter, permease protein |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.674099 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGAAA TGATTCCGCT CGGTACCTGG GTCGACCGGT CCGTTCACTA CCTGCTCGAC CATGACGCGG CAACGTTCGA TGCGATCGGC CGCGCGATCG AGGGCCTCGC CGCGTTCGTC GAGCACGGAC TGCAGGCGAT CCCGATGTGG CTGATGATGG CGATCTTCAT CGGCGTCGGA CTGTGGCGCG TGGGCTGGCG CTTCGCGCTG TTCACCACCT TGTCGCTGCT GCTGATCTTC GCGACGGGCT TCTGGGACCA GACGGTCATC ACGCTCGGTC TCACGCTGTC GTCGACGATC ATCAGCCTCG TGCTCGGCAT CCCGCTCGGC ATCTGGGCCG CGAAGAGCAA GCTGGTCGCC GCGATCGTGC GTCCGATCCT CGACCTGATG CAGACGATGC CCGCATTCGT CTACCTGATT CCGGCCGCGA TGCTGTTCGG TCTCGGCCGC GTGCCGGGGA TCCTGTCGAC GGTGATCTTC GCGATGCCGC CGGCCGTGCG CCTGACGAGC CTCGGCATCC GTCACGTGAA CCGCGAGATC GTCGAAGCCG GCCAGGCATT CGGCTGCACG CCGTGGCAGC TGCTGTACAA GGTGCAGTTT CCGAATGCGC TGCCGTCGAT CATGCAGGGC GTGAACCAGA CGATCATGAT GGCGCTGTCG ATGGTCATCA TTGCATCGAT GGTCGGCGCG GGCGGCCTCG GCAACGACGT GCTCGCGAGT ATCCAGCGCC TCGACATCGG CCTCGGGTTC GAAAGCGGTC TGTCGGTCGT GCTGCTCGCG ATCATTCTCG ACCGCATCAC CGAAAGCTTC GGCCGCGCGC CGGGCACCGT GAAAGCACCG TTGTTCTCGG GCCTGAAGCA GGTGTTCCGC GCGAAGGGCG CGCCCGCTCA AGCCTGA
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Protein sequence | MSEMIPLGTW VDRSVHYLLD HDAATFDAIG RAIEGLAAFV EHGLQAIPMW LMMAIFIGVG LWRVGWRFAL FTTLSLLLIF ATGFWDQTVI TLGLTLSSTI ISLVLGIPLG IWAAKSKLVA AIVRPILDLM QTMPAFVYLI PAAMLFGLGR VPGILSTVIF AMPPAVRLTS LGIRHVNREI VEAGQAFGCT PWQLLYKVQF PNALPSIMQG VNQTIMMALS MVIIASMVGA GGLGNDVLAS IQRLDIGLGF ESGLSVVLLA IILDRITESF GRAPGTVKAP LFSGLKQVFR AKGAPAQA
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