88 homologs were found in PanDaTox collection
for query gene CPS_4933 on replicon NC_003910
Organism: Colwellia psychrerythraea 34H



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_003910  CPS_4933  amino acid ABC transporter, periplasmic amino acid-binding protein  100 
 
 		 323 aa  668    Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_010506  Swoo_1845  substrate-binding region of ABC-type glycine betaine transport system  39.94 
 
 		 334 aa  280  2e-74  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00000186809  normal  0.0102549 
 
 
-
 
NC_009784  VIBHAR_06562  hypothetical protein  42.26 
 
 		 330 aa  263  3e-69  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_0257  substrate-binding region of ABC-type glycine betaine transport system  42.47 
 
 		 334 aa  258  1e-67  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_4235  ABC transporter substrate-binding protein  40.5 
 
 		 334 aa  256  5e-67  Shewanella sediminis HAW-EB3  Bacteria  normal  0.663539  hitchhiker  0.000000168008 
 
 
-
 
NC_009050  Rsph17029_3787  substrate-binding region of ABC-type glycine betaine transport system  40.07 
 
 		 333 aa  255  7e-67  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.347149 
 
 
-
 
NC_007494  RSP_3059  ABC proline/glycine betaine transporter, periplasmic substrate-binding protein  39.74 
 
 		 333 aa  254  1.0000000000000001e-66  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.78778  n/a   
 
 
-
 
NC_009620  Smed_4889  substrate-binding region of ABC-type glycine betaine transport system  37.24 
 
 		 333 aa  244  9.999999999999999e-64  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.64177 
 
 
-
 
NC_013457  VEA_001569  putative periplasmic substrate-binding protein  38.46 
 
 		 331 aa  244  9.999999999999999e-64  Vibrio sp. Ex25  Bacteria  normal  0.496991  n/a   
 
 
-
 
NC_011368  Rleg2_4910  Substrate-binding region of ABC-type glycine betaine transport system  38.71 
 
 		 333 aa  244  9.999999999999999e-64  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012848  Rleg_4822  Substrate-binding region of ABC-type glycine betaine transport system  37.74 
 
 		 333 aa  242  5e-63  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011989  Avi_2573  ABC transporter substrate binding protein  35.76 
 
 		 332 aa  239  5.999999999999999e-62  Agrobacterium vitis S4  Bacteria  normal  0.0219871  n/a   
 
 
-
 
NC_008686  Pden_0945  substrate-binding region of ABC-type glycine betaine transport system  35.74 
 
 		 333 aa  238  1e-61  Paracoccus denitrificans PD1222  Bacteria  normal  0.249192  normal  1 
 
 
-
 
NC_008686  Pden_1195  substrate-binding region of ABC-type glycine betaine transport system  35.74 
 
 		 333 aa  238  1e-61  Paracoccus denitrificans PD1222  Bacteria  normal  0.353421  normal  1 
 
 
-
 
NC_009636  Smed_1767  substrate-binding region of ABC-type glycine betaine transport system  35.46 
 
 		 332 aa  236  3e-61  Sinorhizobium medicae WSM419  Bacteria  normal  0.473646  normal  0.0264882 
 
 
-
 
NC_009636  Smed_0650  substrate-binding region of ABC-type glycine betaine transport system  36.75 
 
 		 332 aa  236  3e-61  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.324621 
 
 
-
 
NC_009428  Rsph17025_2828  substrate-binding region of ABC-type glycine betaine transport system  36.79 
 
 		 333 aa  234  2.0000000000000002e-60  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.23634 
 
 
-
 
NC_012850  Rleg_2382  Substrate-binding region of ABC-type glycine betaine transport system  35.54 
 
 		 331 aa  233  3e-60  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0539771  hitchhiker  0.00933627 
 
 
-
 
NC_011369  Rleg2_2919  Substrate-binding region of ABC-type glycine betaine transport system  37.1 
 
 		 333 aa  229  3e-59  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0603439  normal  1 
 
 
-
 
NC_011369  Rleg2_2138  Substrate-binding region of ABC-type glycine betaine transport system  35.84 
 
 		 331 aa  229  4e-59  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0458223  normal  0.188194 
 
 
-
 
NC_008687  Pden_3856  substrate-binding region of ABC-type glycine betaine transport system  36.42 
 
 		 331 aa  221  9.999999999999999e-57  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.215076 
 
 
-
 
NC_007969  Pcryo_1086  substrate-binding region of ABC-type glycine betaine transport system  29.93 
 
 		 646 aa  162  8.000000000000001e-39  Psychrobacter cryohalolentis K5  Bacteria  normal  0.809733  normal  0.592465 
 
 
-
 
NC_007005  Psyr_3778  substrate-binding region of ABC-type glycine betaine transport system  30.97 
 
 		 337 aa  162  9e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.110017 
 
 
-
 
NC_013946  Mrub_1285  Substrate-binding region of ABC-type glycine betaine transport system  30.45 
 
 		 334 aa  161  1e-38  Meiothermus ruber DSM 1279  Bacteria  normal  0.435568  normal  0.230718 
 
 
-
 
NC_007492  Pfl01_3319  substrate-binding region of ABC-type glycine betaine transport system  28.57 
 
 		 337 aa  160  3e-38  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_67400  putative ABC transporter, periplasmic substrate-binding protein  27.35 
 
 		 340 aa  158  1e-37  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_5836  hypothetical protein  27.24 
 
 		 356 aa  157  2e-37  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009636  Smed_2583  substrate-binding region of ABC-type glycine betaine transport system  28.21 
 
 		 344 aa  156  5.0000000000000005e-37  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.201596 
 
 
-
 
NC_002947  PP_3558  substrate-binding region of ABC-type glycine betaine transport system  29.35 
 
 		 338 aa  149  9e-35  Pseudomonas putida KT2440  Bacteria  normal  0.561868  normal  1 
 
 
-
 
NC_009512  Pput_2216  substrate-binding region of ABC-type glycine betaine transport system  29.03 
 
 		 338 aa  147  2.0000000000000003e-34  Pseudomonas putida F1  Bacteria  normal  0.228946  normal  1 
 
 
-
 
NC_004578  PSPTO_1600  ABC transporter, periplasmic substrate-binding protein, putative  29.69 
 
 		 337 aa  146  4.0000000000000006e-34  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.865849  n/a   
 
 
-
 
NC_008346  Swol_1738  ABC transporter substrate-binding protein  29.56 
 
 		 340 aa  145  8.000000000000001e-34  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0735907  n/a   
 
 
-
 
NC_007492  Pfl01_4344  substrate-binding region of ABC-type glycine betaine transport system  28.93 
 
 		 337 aa  143  4e-33  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_2363  substrate-binding region of ABC-type glycine betaine transport system  26.91 
 
 		 338 aa  140  1.9999999999999998e-32  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009719  Plav_1066  substrate-binding region of ABC-type glycine betaine transport system  29.75 
 
 		 633 aa  140  3.9999999999999997e-32  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009524  PsycPRwf_1376  substrate-binding region of ABC-type glycine betaine transport system  27.24 
 
 		 652 aa  137  3.0000000000000003e-31  Psychrobacter sp. PRwf-1  Bacteria  normal  1  hitchhiker  0.000369923 
 
 
-
 
NC_009832  Spro_0802  substrate-binding region of ABC-type glycine betaine transport system  25.3 
 
 		 321 aa  134  1.9999999999999998e-30  Serratia proteamaculans 568  Bacteria  normal  0.0332812  normal  1 
 
 
-
 
NC_004578  PSPTO_5271  histidine transporter, periplasmic histidine-binding protein  26.45 
 
 		 322 aa  124  2e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_2543  substrate-binding region of ABC-type glycine betaine transport system  25.39 
 
 		 342 aa  123  4e-27  Chelativorans sp. BNC1  Bacteria  normal  0.221502  n/a   
 
 
-
 
NC_007511  Bcep18194_B2845  ABC proline/glycine betaine transporter, periplasmic ligand binding protein  26.05 
 
 		 345 aa  121  9.999999999999999e-27  Burkholderia sp. 383  Bacteria  normal  1  normal  0.894091 
 
 
-
 
NC_008463  PA14_67300  putative binding protein component of ABC transporter  24.19 
 
 		 322 aa  121  9.999999999999999e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007005  Psyr_4829  substrate-binding region of ABC-type glycine betaine transport system  26.13 
 
 		 322 aa  121  1.9999999999999998e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.93299 
 
 
-
 
NC_010718  Nther_2048  Substrate-binding region of ABC-type glycine betaine transport system  25.8 
 
 		 341 aa  119  7.999999999999999e-26  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0715987  decreased coverage  0.00000000000901879 
 
 
-
 
NC_009656  PSPA7_5830  ABC transporter periplasmic binding protein  23.79 
 
 		 322 aa  119  9e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_0362  substrate-binding region of ABC-type glycine betaine transport system  25.16 
 
 		 322 aa  112  8.000000000000001e-24  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.376501  normal  1 
 
 
-
 
NC_014165  Tbis_1134  glycine betaine ABC transporter substrate-binding protein  21.23 
 
 		 317 aa  68.6  0.0000000001  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.71375 
 
 
-
 
NC_008751  Dvul_0958  substrate-binding region of ABC-type glycine betaine transport system  21.9 
 
 		 285 aa  65.1  0.000000002  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.00282078  normal  0.248441 
 
 
-
 
NC_011370  Rleg2_6171  Substrate-binding region of ABC-type glycine betaine transport system  24.33 
 
 		 318 aa  63.9  0.000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.367394 
 
 
-
 
NC_009380  Strop_1643  substrate-binding region of ABC-type glycine betaine transport system  22.41 
 
 		 323 aa  63.5  0.000000005  Salinispora tropica CNB-440  Bacteria  normal  0.010471  normal  1 
 
 
-
 
NC_013173  Dbac_3319  Substrate-binding region of ABC-type glycine betaine transport system  22.54 
 
 		 279 aa  62.8  0.000000007  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.28138  n/a   
 
 
-
 
NC_009953  Sare_1628  substrate-binding region of ABC-type glycine betaine transport system  21.81 
 
 		 324 aa  62.4  0.00000001  Salinispora arenicola CNS-205  Bacteria  normal  0.634582  normal  1 
 
 
-
 
NC_009943  Dole_2763  substrate-binding region of ABC-type glycine betaine transport system  21.73 
 
 		 284 aa  61.6  0.00000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0427474  n/a   
 
 
-
 
NC_011769  DvMF_1043  Substrate-binding region of ABC-type glycine betaine transport system  20.89 
 
 		 287 aa  60.8  0.00000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  1 
 
 
-
 
NC_013947  Snas_2396  Substrate-binding region of ABC-type glycine betaine transport system  20.19 
 
 		 314 aa  60.1  0.00000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.83747  hitchhiker  0.000913379 
 
 
-
 
NC_013223  Dret_1472  Substrate-binding region of ABC-type glycine betaine transport system  22.7 
 
 		 280 aa  60.1  0.00000006  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.338312  hitchhiker  0.00631972 
 
 
-
 
NC_011883  Ddes_0822  Substrate-binding region of ABC-type glycine betaine transport system  20.75 
 
 		 287 aa  58.9  0.0000001  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_3406  Substrate-binding region of ABC-type glycine betaine transport system  21.28 
 
 		 278 aa  58.9  0.0000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011757  Mchl_4028  Substrate-binding region of ABC-type glycine betaine transport system  21.57 
 
 		 278 aa  58.2  0.0000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.662148 
 
 
-
 
NC_010172  Mext_3733  substrate-binding region of ABC-type glycine betaine transport system  21.57 
 
 		 278 aa  58.5  0.0000002  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.409518 
 
 
-
 
NC_009953  Sare_3224  substrate-binding region of ABC-type glycine betaine transport system  22.37 
 
 		 323 aa  57.4  0.0000003  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_1793  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  21.8 
 
 		 308 aa  57  0.0000005  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_2490  substrate-binding region of ABC-type glycine betaine transport system  20.92 
 
 		 278 aa  55.1  0.000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.962073 
 
 
-
 
NC_011899  Hore_21490  Substrate-binding region of ABC-type glycine betaine transport system  20.69 
 
 		 285 aa  54.7  0.000002  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_007519  Dde_0675  glycine/betaine/L-proline ABC transporter, periplasmic-binding protein  19.94 
 
 		 279 aa  53.9  0.000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.000223596  n/a   
 
 
-
 
NC_007963  Csal_1901  substrate-binding region of ABC-type glycine betaine transport system  19.21 
 
 		 294 aa  54.3  0.000003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.135733  n/a   
 
 
-
 
NC_007492  Pfl01_2780  substrate-binding region of ABC-type glycine betaine transport system  22.36 
 
 		 325 aa  53.5  0.000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011830  Dhaf_2308  Substrate-binding region of ABC-type glycine betaine transport system  24.05 
 
 		 298 aa  52.8  0.000008  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00541806  n/a   
 
 
-
 
NC_008392  Bamb_5760  substrate-binding region of ABC-type glycine betaine transport system  24.61 
 
 		 293 aa  52.4  0.00001  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013757  Gobs_4217  Substrate-binding region of ABC-type glycine betaine transport system  22.79 
 
 		 319 aa  52  0.00001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_3102  substrate-binding region of ABC-type glycine betaine transport system  22.11 
 
 		 286 aa  51.6  0.00002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_1794  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  21.45 
 
 		 330 aa  51.6  0.00002  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_0304  hypothetical protein  23.84 
 
 		 322 aa  48.9  0.0001  Pseudomonas putida KT2440  Bacteria  normal  1  hitchhiker  0.00268504 
 
 
-
 
NC_009253  Dred_0473  substrate-binding region of ABC-type glycine betaine transport system  22.48 
 
 		 284 aa  48.9  0.0001  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008709  Ping_3427  substrate-binding region of ABC-type glycine betaine transport system  23.97 
 
 		 310 aa  47.8  0.0002  Psychromonas ingrahamii 37  Bacteria  normal  1  hitchhiker  0.00319099 
 
 
-
 
NC_010501  PputW619_1291  substrate-binding region of ABC-type glycine betaine transport system  23.31 
 
 		 286 aa  46.6  0.0006  Pseudomonas putida W619  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009512  Pput_0324  substrate-binding region of ABC-type glycine betaine transport system  23.51 
 
 		 314 aa  46.2  0.0007  Pseudomonas putida F1  Bacteria  normal  0.210112  normal  0.40501 
 
 
-
 
NC_009135  MmarC5_0671  substrate-binding region of ABC-type glycine betaine transport system  20.92 
 
 		 295 aa  45.1  0.001  Methanococcus maripaludis C5  Archaea  normal  1  n/a   
 
 
-
 
NC_002947  PP_2775  glycine betaine/L-proline ABC transporter, periplasmic binding protein, putative  21.92 
 
 		 374 aa  45.1  0.002  Pseudomonas putida KT2440  Bacteria  normal  0.475032  normal  1 
 
 
-
 
NC_007955  Mbur_0503  ABC glycine betaine/L-proline transporter, substrate-binding subunit  20.13 
 
 		 290 aa  44.7  0.002  Methanococcoides burtonii DSM 6242  Archaea  normal  0.123581  n/a   
 
 
-
 
NC_013440  Hoch_5464  Substrate-binding region of ABC-type glycine betaine transport system  19.57 
 
 		 312 aa  44.3  0.003  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.102731 
 
 
-
 
NC_010625  Bphy_6868  substrate-binding region of ABC-type glycine betaine transport system  20.42 
 
 		 293 aa  44.3  0.003  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_0328  choline ABC transporter, periplasmic binding protein  22.78 
 
 		 314 aa  44.3  0.003  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009051  Memar_0992  substrate-binding region of ABC-type glycine betaine transport system  19.68 
 
 		 289 aa  44.3  0.003  Methanoculleus marisnigri JR1  Archaea  normal  0.0300335  n/a   
 
 
-
 
NC_007963  Csal_3169  substrate-binding region of ABC-type glycine betaine transport system  21.65 
 
 		 284 aa  43.9  0.004  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_011368  Rleg2_5281  Substrate-binding region of ABC-type glycine betaine transport system  25.48 
 
 		 283 aa  43.5  0.005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.102364  normal  0.190952 
 
 
-
 
NC_012848  Rleg_4837  Substrate-binding region of ABC-type glycine betaine transport system  25.48 
 
 		 283 aa  43.1  0.006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.180074  normal  0.0229779 
 
 
-
 
NC_009637  MmarC7_0111  substrate-binding region of ABC-type glycine betaine transport system  20.59 
 
 		 295 aa  43.1  0.006  Methanococcus maripaludis C7  Archaea  normal  0.671517  normal  0.246313 
 
 
-
 
NC_009439  Pmen_0485  substrate-binding region of ABC-type glycine betaine transport system  21.16 
 
 		 314 aa  42.7  0.008  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
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