| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4235 |
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| Symbol | |
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| ID | 5614026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5200199 |
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| End bp | 5201203 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640935194 |
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| Product | ABC transporter substrate-binding protein |
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| Protein accession | YP_001475967 |
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| Protein GI | 157377367 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.663539 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000168008 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAGTA TGATTTTGAT TGGCGGCTTA CTCCTTAGTA GCGCTACACA TCAAGCCTTT
GCCGAAGAGC AATGCGGTAA GGTCACTATC GCAGATATGA ATTGGAGCTC GGCTTCATTA
ATCGCTAATG TTGATCGCTT TATTTTAGAA CATGGTTACG GCTGTGAAGC CGAGCTGATC
CCTGGCGATA CTATGCCTAC CAGCACTTCA ATGGTTGAAA AAGGTGAGCC TGACATCGCG
CCGGAAATCT GGAGCAACAG CGTCAAAGAG CTTATCGAAC GTGGGGTCAG TGACAAACGA
CTGACTATCG CAGGTAATTC ACTCTCTGAA GGCGGTGAAG AAGGCTTTTG GGTCCCCCAA
TATATGGTCG ACAAGGACCC CAGTCTGACA ACCATTGAAG GTATTATCGC CAAAGTAAAA
ACCTTTGAGC ACCCGGAAGA TCCTGACCGT GGCGCATTTT ATGGCTGCCC TGCGGGTTGG
GGCTGTCAGC TCTCGGCCGA AAACCTGTAT CGCGCGCTAA AACTCAGTGA TGCAGGGTTT
GATCTTATTG ACCCAGGCTC AGGAGCTGGC CTGTCAGGTT CCATAGCCCG TGCCTACGAG
CGTGAAAAGC CTTGGTTTGG TTACTACTGG GCACCCACTG CGGTATTGGG TAAGTACAAA
ATGGCTAAGG TAGATTTTGG TAGCGGTACC GATGCGGATC ATTTTCGCGA CTGTATCGCC
AAAGTCGAGT GCGCCGAGCC CAAGGTCACC ATGTATCCAT CTGCATTGGT ACAAACTGTC
ACCACCACAG CTTTCGCTGA AAAATCAACC CGGGAATTTG AGTATCTTGG TACACGCTCA
TTGACCAATG CCCAGATGAA CGGCTTGCTG GCTTGGATGG AAGACAACCA GGCAGACGGC
AATATCGCAG CCGAGTATTT CCTGATGAAT CATGAAGACA CATGGCTTAA ATGGGTTCCT
GCCGATGTCG CCGCAAAGGT GAAAGCCGCA ATCGAAGCAC TATAA
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| Protein sequence | MKSMILIGGL LLSSATHQAF AEEQCGKVTI ADMNWSSASL IANVDRFILE HGYGCEAELI
PGDTMPTSTS MVEKGEPDIA PEIWSNSVKE LIERGVSDKR LTIAGNSLSE GGEEGFWVPQ
YMVDKDPSLT TIEGIIAKVK TFEHPEDPDR GAFYGCPAGW GCQLSAENLY RALKLSDAGF
DLIDPGSGAG LSGSIARAYE REKPWFGYYW APTAVLGKYK MAKVDFGSGT DADHFRDCIA
KVECAEPKVT MYPSALVQTV TTTAFAEKST REFEYLGTRS LTNAQMNGLL AWMEDNQADG
NIAAEYFLMN HEDTWLKWVP ADVAAKVKAA IEAL
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