79 homologs were found in PanDaTox collection
for query gene Ssed_4235 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009831  Ssed_4235  ABC transporter substrate-binding protein  100 
 
 		 334 aa  692    Shewanella sediminis HAW-EB3  Bacteria  normal  0.663539  hitchhiker  0.000000168008 
 
 
-
 
NC_009901  Spea_0257  substrate-binding region of ABC-type glycine betaine transport system  85.58 
 
 		 334 aa  588  1e-167  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_010506  Swoo_1845  substrate-binding region of ABC-type glycine betaine transport system  79.82 
 
 		 334 aa  571  1.0000000000000001e-162  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00000186809  normal  0.0102549 
 
 
-
 
NC_009784  VIBHAR_06562  hypothetical protein  63.31 
 
 		 330 aa  433  1e-120  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_001569  putative periplasmic substrate-binding protein  59.87 
 
 		 331 aa  419  1e-116  Vibrio sp. Ex25  Bacteria  normal  0.496991  n/a   
 
 
-
 
NC_011989  Avi_2573  ABC transporter substrate binding protein  48.63 
 
 		 332 aa  335  7e-91  Agrobacterium vitis S4  Bacteria  normal  0.0219871  n/a   
 
 
-
 
NC_009636  Smed_1767  substrate-binding region of ABC-type glycine betaine transport system  48.54 
 
 		 332 aa  327  2.0000000000000001e-88  Sinorhizobium medicae WSM419  Bacteria  normal  0.473646  normal  0.0264882 
 
 
-
 
NC_009428  Rsph17025_2828  substrate-binding region of ABC-type glycine betaine transport system  49.5 
 
 		 333 aa  324  1e-87  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.23634 
 
 
-
 
NC_009636  Smed_0650  substrate-binding region of ABC-type glycine betaine transport system  46.83 
 
 		 332 aa  323  2e-87  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.324621 
 
 
-
 
NC_008686  Pden_1195  substrate-binding region of ABC-type glycine betaine transport system  47.76 
 
 		 333 aa  322  4e-87  Paracoccus denitrificans PD1222  Bacteria  normal  0.353421  normal  1 
 
 
-
 
NC_008686  Pden_0945  substrate-binding region of ABC-type glycine betaine transport system  47.76 
 
 		 333 aa  322  4e-87  Paracoccus denitrificans PD1222  Bacteria  normal  0.249192  normal  1 
 
 
-
 
NC_009050  Rsph17029_3787  substrate-binding region of ABC-type glycine betaine transport system  48.66 
 
 		 333 aa  318  1e-85  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.347149 
 
 
-
 
NC_007494  RSP_3059  ABC proline/glycine betaine transporter, periplasmic substrate-binding protein  48.66 
 
 		 333 aa  317  1e-85  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.78778  n/a   
 
 
-
 
NC_008687  Pden_3856  substrate-binding region of ABC-type glycine betaine transport system  45.98 
 
 		 331 aa  309  5e-83  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.215076 
 
 
-
 
NC_011368  Rleg2_4910  Substrate-binding region of ABC-type glycine betaine transport system  44.65 
 
 		 333 aa  307  2.0000000000000002e-82  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012848  Rleg_4822  Substrate-binding region of ABC-type glycine betaine transport system  44.65 
 
 		 333 aa  306  2.0000000000000002e-82  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012850  Rleg_2382  Substrate-binding region of ABC-type glycine betaine transport system  43.67 
 
 		 331 aa  302  6.000000000000001e-81  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0539771  hitchhiker  0.00933627 
 
 
-
 
NC_011369  Rleg2_2138  Substrate-binding region of ABC-type glycine betaine transport system  43.37 
 
 		 331 aa  295  7e-79  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0458223  normal  0.188194 
 
 
-
 
NC_009620  Smed_4889  substrate-binding region of ABC-type glycine betaine transport system  43.03 
 
 		 333 aa  288  9e-77  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.64177 
 
 
-
 
NC_011369  Rleg2_2919  Substrate-binding region of ABC-type glycine betaine transport system  40.96 
 
 		 333 aa  285  1.0000000000000001e-75  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0603439  normal  1 
 
 
-
 
NC_003910  CPS_4933  amino acid ABC transporter, periplasmic amino acid-binding protein  40.43 
 
 		 323 aa  258  1e-67  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1285  Substrate-binding region of ABC-type glycine betaine transport system  30.29 
 
 		 334 aa  168  1e-40  Meiothermus ruber DSM 1279  Bacteria  normal  0.435568  normal  0.230718 
 
 
-
 
NC_008346  Swol_1738  ABC transporter substrate-binding protein  31.13 
 
 		 340 aa  161  2e-38  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0735907  n/a   
 
 
-
 
NC_009656  PSPA7_5836  hypothetical protein  28.49 
 
 		 356 aa  157  2e-37  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007511  Bcep18194_B2845  ABC proline/glycine betaine transporter, periplasmic ligand binding protein  31.01 
 
 		 345 aa  152  8e-36  Burkholderia sp. 383  Bacteria  normal  1  normal  0.894091 
 
 
-
 
NC_008463  PA14_67400  putative ABC transporter, periplasmic substrate-binding protein  26.45 
 
 		 340 aa  150  4e-35  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007005  Psyr_3778  substrate-binding region of ABC-type glycine betaine transport system  29.45 
 
 		 337 aa  149  5e-35  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.110017 
 
 
-
 
NC_009636  Smed_2583  substrate-binding region of ABC-type glycine betaine transport system  29.43 
 
 		 344 aa  148  1.0000000000000001e-34  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.201596 
 
 
-
 
NC_007969  Pcryo_1086  substrate-binding region of ABC-type glycine betaine transport system  26.42 
 
 		 646 aa  147  2.0000000000000003e-34  Psychrobacter cryohalolentis K5  Bacteria  normal  0.809733  normal  0.592465 
 
 
-
 
NC_009524  PsycPRwf_1376  substrate-binding region of ABC-type glycine betaine transport system  26.25 
 
 		 652 aa  144  2e-33  Psychrobacter sp. PRwf-1  Bacteria  normal  1  hitchhiker  0.000369923 
 
 
-
 
NC_007492  Pfl01_4344  substrate-binding region of ABC-type glycine betaine transport system  27.65 
 
 		 337 aa  143  4e-33  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_2543  substrate-binding region of ABC-type glycine betaine transport system  29.08 
 
 		 342 aa  142  9e-33  Chelativorans sp. BNC1  Bacteria  normal  0.221502  n/a   
 
 
-
 
NC_009656  PSPA7_5830  ABC transporter periplasmic binding protein  27.27 
 
 		 322 aa  142  9.999999999999999e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_3319  substrate-binding region of ABC-type glycine betaine transport system  28.43 
 
 		 337 aa  140  3.9999999999999997e-32  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009832  Spro_0802  substrate-binding region of ABC-type glycine betaine transport system  27.73 
 
 		 321 aa  137  2e-31  Serratia proteamaculans 568  Bacteria  normal  0.0332812  normal  1 
 
 
-
 
NC_009512  Pput_2216  substrate-binding region of ABC-type glycine betaine transport system  27.81 
 
 		 338 aa  136  5e-31  Pseudomonas putida F1  Bacteria  normal  0.228946  normal  1 
 
 
-
 
NC_009719  Plav_1066  substrate-binding region of ABC-type glycine betaine transport system  29.41 
 
 		 633 aa  135  7.000000000000001e-31  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_3558  substrate-binding region of ABC-type glycine betaine transport system  27.91 
 
 		 338 aa  134  1.9999999999999998e-30  Pseudomonas putida KT2440  Bacteria  normal  0.561868  normal  1 
 
 
-
 
NC_008463  PA14_67300  putative binding protein component of ABC transporter  25.56 
 
 		 322 aa  133  5e-30  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_1600  ABC transporter, periplasmic substrate-binding protein, putative  29.64 
 
 		 337 aa  133  5e-30  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.865849  n/a   
 
 
-
 
NC_004578  PSPTO_5271  histidine transporter, periplasmic histidine-binding protein  25.96 
 
 		 322 aa  129  5.0000000000000004e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_4829  substrate-binding region of ABC-type glycine betaine transport system  26.1 
 
 		 322 aa  127  3e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.93299 
 
 
-
 
NC_010322  PputGB1_2363  substrate-binding region of ABC-type glycine betaine transport system  26.13 
 
 		 338 aa  125  1e-27  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010718  Nther_2048  Substrate-binding region of ABC-type glycine betaine transport system  25.82 
 
 		 341 aa  124  2e-27  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0715987  decreased coverage  0.00000000000901879 
 
 
-
 
NC_007492  Pfl01_0362  substrate-binding region of ABC-type glycine betaine transport system  25.37 
 
 		 322 aa  123  4e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.376501  normal  1 
 
 
-
 
NC_011370  Rleg2_6171  Substrate-binding region of ABC-type glycine betaine transport system  25.77 
 
 		 318 aa  75.1  0.000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.367394 
 
 
-
 
NC_014165  Tbis_1134  glycine betaine ABC transporter substrate-binding protein  23.23 
 
 		 317 aa  75.1  0.000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.71375 
 
 
-
 
NC_013595  Sros_1793  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  24.17 
 
 		 308 aa  70.9  0.00000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_1794  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  22.59 
 
 		 330 aa  65.9  0.0000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009953  Sare_3224  substrate-binding region of ABC-type glycine betaine transport system  22.52 
 
 		 323 aa  65.5  0.000000001  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_2396  Substrate-binding region of ABC-type glycine betaine transport system  20.67 
 
 		 314 aa  63.9  0.000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.83747  hitchhiker  0.000913379 
 
 
-
 
NC_007492  Pfl01_2780  substrate-binding region of ABC-type glycine betaine transport system  21.84 
 
 		 325 aa  62.8  0.000000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009380  Strop_1643  substrate-binding region of ABC-type glycine betaine transport system  22.26 
 
 		 323 aa  60.1  0.00000006  Salinispora tropica CNB-440  Bacteria  normal  0.010471  normal  1 
 
 
-
 
NC_009953  Sare_1628  substrate-binding region of ABC-type glycine betaine transport system  22.26 
 
 		 324 aa  59.3  0.00000008  Salinispora arenicola CNS-205  Bacteria  normal  0.634582  normal  1 
 
 
-
 
NC_013440  Hoch_5464  Substrate-binding region of ABC-type glycine betaine transport system  22.18 
 
 		 312 aa  52.8  0.000008  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.102731 
 
 
-
 
NC_009428  Rsph17025_2313  substrate-binding region of ABC-type glycine betaine transport system  23.15 
 
 		 308 aa  52.8  0.000008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009620  Smed_3713  substrate-binding region of ABC-type glycine betaine transport system  22.4 
 
 		 336 aa  52.4  0.00001  Sinorhizobium medicae WSM419  Bacteria  normal  0.252604  normal  1 
 
 
-
 
NC_007493  RSP_2181  ABC glycine betaine/L-proline transporter, periplasmic substrate-binding subunit  23.95 
 
 		 308 aa  51.6  0.00002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_1517  substrate-binding region of ABC-type glycine betaine transport system  24.61 
 
 		 316 aa  51.6  0.00002  Chromohalobacter salexigens DSM 3043  Bacteria  hitchhiker  0.00127851  n/a   
 
 
-
 
NC_009049  Rsph17029_0853  substrate-binding region of ABC-type glycine betaine transport system  23.95 
 
 		 308 aa  51.6  0.00002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.564926  normal  1 
 
 
-
 
NC_009656  PSPA7_6163  hypothetical protein  23.15 
 
 		 312 aa  50.1  0.00005  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_002947  PP_2775  glycine betaine/L-proline ABC transporter, periplasmic binding protein, putative  22.02 
 
 		 374 aa  50.1  0.00006  Pseudomonas putida KT2440  Bacteria  normal  0.475032  normal  1 
 
 
-
 
NC_008463  PA14_71030  hypothetical protein  22.19 
 
 		 312 aa  47.8  0.0003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008751  Dvul_0958  substrate-binding region of ABC-type glycine betaine transport system  22.15 
 
 		 285 aa  47  0.0004  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.00282078  normal  0.248441 
 
 
-
 
NC_003910  CPS_4895  putative ABC transporter, substrate-binding protein  23.53 
 
 		 318 aa  47  0.0004  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_0485  substrate-binding region of ABC-type glycine betaine transport system  25.24 
 
 		 314 aa  47  0.0005  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008392  Bamb_5760  substrate-binding region of ABC-type glycine betaine transport system  24.39 
 
 		 293 aa  47  0.0005  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004311  BRA0738  glycine betaine/L-proline ABC transporter, periplasmic glycine betaine-binding protein, putative  24.03 
 
 		 288 aa  46.6  0.0007  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_004578  PSPTO_0464  glycine betaine/L-proline ABC transporter, periplasmic substrate-binding protein  23.91 
 
 		 315 aa  45.1  0.002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007511  Bcep18194_B2798  ABC proline/glycine betaine transporter, periplasmic ligand binding protein  22.77 
 
 		 314 aa  45.1  0.002  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_3406  Substrate-binding region of ABC-type glycine betaine transport system  23.98 
 
 		 278 aa  44.3  0.003  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011883  Ddes_0822  Substrate-binding region of ABC-type glycine betaine transport system  20.77 
 
 		 287 aa  43.5  0.006  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  1  n/a   
 
 
-
 
NC_009668  Oant_2920  substrate-binding region of ABC-type glycine betaine transport system  23.91 
 
 		 308 aa  43.1  0.006  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_010625  Bphy_6868  substrate-binding region of ABC-type glycine betaine transport system  21.52 
 
 		 293 aa  43.1  0.006  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009668  Oant_3887  substrate-binding region of ABC-type glycine betaine transport system  27.39 
 
 		 288 aa  43.1  0.007  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.326958  n/a   
 
 
-
 
NC_007963  Csal_1901  substrate-binding region of ABC-type glycine betaine transport system  20.81 
 
 		 294 aa  42.7  0.008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.135733  n/a   
 
 
-
 
NC_007005  Psyr_4709  substrate-binding region of ABC-type glycine betaine transport system  23.62 
 
 		 315 aa  42.7  0.009  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_0328  choline ABC transporter, periplasmic binding protein  22.32 
 
 		 314 aa  42.4  0.01  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_5238  substrate-binding region of ABC-type glycine betaine transport system  24.13 
 
 		 315 aa  42.4  0.01  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.848607  normal  0.0231703 
 
 
-
 
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