66 homologs were found in PanDaTox collection
for query gene Rsph17025_2828 on replicon NC_009428
Organism: Rhodobacter sphaeroides ATCC 17025



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009428  Rsph17025_2828  substrate-binding region of ABC-type glycine betaine transport system  100 
 
 		 333 aa  672    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.23634 
 
 
-
 
NC_009050  Rsph17029_3787  substrate-binding region of ABC-type glycine betaine transport system  83.85 
 
 		 333 aa  547  1e-155  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.347149 
 
 
-
 
NC_007494  RSP_3059  ABC proline/glycine betaine transporter, periplasmic substrate-binding protein  83.85 
 
 		 333 aa  544  1e-154  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.78778  n/a   
 
 
-
 
NC_011989  Avi_2573  ABC transporter substrate binding protein  64.26 
 
 		 332 aa  462  1e-129  Agrobacterium vitis S4  Bacteria  normal  0.0219871  n/a   
 
 
-
 
NC_009636  Smed_1767  substrate-binding region of ABC-type glycine betaine transport system  62.76 
 
 		 332 aa  451  1.0000000000000001e-126  Sinorhizobium medicae WSM419  Bacteria  normal  0.473646  normal  0.0264882 
 
 
-
 
NC_012850  Rleg_2382  Substrate-binding region of ABC-type glycine betaine transport system  57.96 
 
 		 331 aa  409  1e-113  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0539771  hitchhiker  0.00933627 
 
 
-
 
NC_011369  Rleg2_2138  Substrate-binding region of ABC-type glycine betaine transport system  57.66 
 
 		 331 aa  406  1.0000000000000001e-112  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0458223  normal  0.188194 
 
 
-
 
NC_008687  Pden_3856  substrate-binding region of ABC-type glycine betaine transport system  60.48 
 
 		 331 aa  402  1e-111  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.215076 
 
 
-
 
NC_009636  Smed_0650  substrate-binding region of ABC-type glycine betaine transport system  52.55 
 
 		 332 aa  372  1e-102  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.324621 
 
 
-
 
NC_012848  Rleg_4822  Substrate-binding region of ABC-type glycine betaine transport system  51.2 
 
 		 333 aa  361  8e-99  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009620  Smed_4889  substrate-binding region of ABC-type glycine betaine transport system  50.9 
 
 		 333 aa  357  1.9999999999999998e-97  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.64177 
 
 
-
 
NC_011368  Rleg2_4910  Substrate-binding region of ABC-type glycine betaine transport system  50.9 
 
 		 333 aa  357  1.9999999999999998e-97  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009784  VIBHAR_06562  hypothetical protein  51.47 
 
 		 330 aa  344  1e-93  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008686  Pden_0945  substrate-binding region of ABC-type glycine betaine transport system  51.38 
 
 		 333 aa  340  2e-92  Paracoccus denitrificans PD1222  Bacteria  normal  0.249192  normal  1 
 
 
-
 
NC_008686  Pden_1195  substrate-binding region of ABC-type glycine betaine transport system  51.38 
 
 		 333 aa  340  2e-92  Paracoccus denitrificans PD1222  Bacteria  normal  0.353421  normal  1 
 
 
-
 
NC_010506  Swoo_1845  substrate-binding region of ABC-type glycine betaine transport system  48.55 
 
 		 334 aa  333  2e-90  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00000186809  normal  0.0102549 
 
 
-
 
NC_009901  Spea_0257  substrate-binding region of ABC-type glycine betaine transport system  48.72 
 
 		 334 aa  331  1e-89  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_4235  ABC transporter substrate-binding protein  48.87 
 
 		 334 aa  329  3e-89  Shewanella sediminis HAW-EB3  Bacteria  normal  0.663539  hitchhiker  0.000000168008 
 
 
-
 
NC_011369  Rleg2_2919  Substrate-binding region of ABC-type glycine betaine transport system  49.1 
 
 		 333 aa  323  2e-87  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0603439  normal  1 
 
 
-
 
NC_013457  VEA_001569  putative periplasmic substrate-binding protein  46.28 
 
 		 331 aa  315  7e-85  Vibrio sp. Ex25  Bacteria  normal  0.496991  n/a   
 
 
-
 
NC_003910  CPS_4933  amino acid ABC transporter, periplasmic amino acid-binding protein  36.83 
 
 		 323 aa  243  3.9999999999999997e-63  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1285  Substrate-binding region of ABC-type glycine betaine transport system  33.23 
 
 		 334 aa  172  7.999999999999999e-42  Meiothermus ruber DSM 1279  Bacteria  normal  0.435568  normal  0.230718 
 
 
-
 
NC_007969  Pcryo_1086  substrate-binding region of ABC-type glycine betaine transport system  30.49 
 
 		 646 aa  152  5.9999999999999996e-36  Psychrobacter cryohalolentis K5  Bacteria  normal  0.809733  normal  0.592465 
 
 
-
 
NC_009524  PsycPRwf_1376  substrate-binding region of ABC-type glycine betaine transport system  30.03 
 
 		 652 aa  147  2.0000000000000003e-34  Psychrobacter sp. PRwf-1  Bacteria  normal  1  hitchhiker  0.000369923 
 
 
-
 
NC_009719  Plav_1066  substrate-binding region of ABC-type glycine betaine transport system  31.73 
 
 		 633 aa  146  4.0000000000000006e-34  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_5836  hypothetical protein  30.36 
 
 		 356 aa  145  1e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_67400  putative ABC transporter, periplasmic substrate-binding protein  28.53 
 
 		 340 aa  137  2e-31  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_2543  substrate-binding region of ABC-type glycine betaine transport system  30.53 
 
 		 342 aa  133  3.9999999999999996e-30  Chelativorans sp. BNC1  Bacteria  normal  0.221502  n/a   
 
 
-
 
NC_009656  PSPA7_5830  ABC transporter periplasmic binding protein  27.09 
 
 		 322 aa  129  6e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008346  Swol_1738  ABC transporter substrate-binding protein  28.08 
 
 		 340 aa  128  1.0000000000000001e-28  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0735907  n/a   
 
 
-
 
NC_007005  Psyr_4829  substrate-binding region of ABC-type glycine betaine transport system  26.93 
 
 		 322 aa  127  3e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.93299 
 
 
-
 
NC_007005  Psyr_3778  substrate-binding region of ABC-type glycine betaine transport system  27.7 
 
 		 337 aa  126  6e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.110017 
 
 
-
 
NC_004578  PSPTO_5271  histidine transporter, periplasmic histidine-binding protein  26.63 
 
 		 322 aa  125  7e-28  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_4344  substrate-binding region of ABC-type glycine betaine transport system  26.78 
 
 		 337 aa  125  8.000000000000001e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_3319  substrate-binding region of ABC-type glycine betaine transport system  27.39 
 
 		 337 aa  124  2e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009636  Smed_2583  substrate-binding region of ABC-type glycine betaine transport system  28.83 
 
 		 344 aa  123  4e-27  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.201596 
 
 
-
 
NC_009832  Spro_0802  substrate-binding region of ABC-type glycine betaine transport system  25.29 
 
 		 321 aa  122  9e-27  Serratia proteamaculans 568  Bacteria  normal  0.0332812  normal  1 
 
 
-
 
NC_007511  Bcep18194_B2845  ABC proline/glycine betaine transporter, periplasmic ligand binding protein  28.08 
 
 		 345 aa  117  1.9999999999999998e-25  Burkholderia sp. 383  Bacteria  normal  1  normal  0.894091 
 
 
-
 
NC_008463  PA14_67300  putative binding protein component of ABC transporter  24.53 
 
 		 322 aa  117  3.9999999999999997e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009512  Pput_2216  substrate-binding region of ABC-type glycine betaine transport system  27.35 
 
 		 338 aa  116  3.9999999999999997e-25  Pseudomonas putida F1  Bacteria  normal  0.228946  normal  1 
 
 
-
 
NC_002947  PP_3558  substrate-binding region of ABC-type glycine betaine transport system  27.33 
 
 		 338 aa  115  1.0000000000000001e-24  Pseudomonas putida KT2440  Bacteria  normal  0.561868  normal  1 
 
 
-
 
NC_007492  Pfl01_0362  substrate-binding region of ABC-type glycine betaine transport system  24.93 
 
 		 322 aa  114  3e-24  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.376501  normal  1 
 
 
-
 
NC_010322  PputGB1_2363  substrate-binding region of ABC-type glycine betaine transport system  26.4 
 
 		 338 aa  112  1.0000000000000001e-23  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_1600  ABC transporter, periplasmic substrate-binding protein, putative  27.41 
 
 		 337 aa  110  3e-23  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.865849  n/a   
 
 
-
 
NC_010718  Nther_2048  Substrate-binding region of ABC-type glycine betaine transport system  26.65 
 
 		 341 aa  99.8  6e-20  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0715987  decreased coverage  0.00000000000901879 
 
 
-
 
NC_009953  Sare_3224  substrate-binding region of ABC-type glycine betaine transport system  25 
 
 		 323 aa  84.3  0.000000000000003  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_1794  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  25.93 
 
 		 330 aa  80.5  0.00000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014165  Tbis_1134  glycine betaine ABC transporter substrate-binding protein  22.82 
 
 		 317 aa  75.5  0.000000000001  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.71375 
 
 
-
 
NC_013595  Sros_1793  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  23.59 
 
 		 308 aa  73.2  0.000000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009953  Sare_1628  substrate-binding region of ABC-type glycine betaine transport system  23.91 
 
 		 324 aa  70.5  0.00000000004  Salinispora arenicola CNS-205  Bacteria  normal  0.634582  normal  1 
 
 
-
 
NC_009380  Strop_1643  substrate-binding region of ABC-type glycine betaine transport system  24.18 
 
 		 323 aa  70.1  0.00000000005  Salinispora tropica CNB-440  Bacteria  normal  0.010471  normal  1 
 
 
-
 
NC_011370  Rleg2_6171  Substrate-binding region of ABC-type glycine betaine transport system  25.08 
 
 		 318 aa  67  0.0000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.367394 
 
 
-
 
NC_013947  Snas_2396  Substrate-binding region of ABC-type glycine betaine transport system  21.34 
 
 		 314 aa  63.5  0.000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.83747  hitchhiker  0.000913379 
 
 
-
 
NC_008709  Ping_3427  substrate-binding region of ABC-type glycine betaine transport system  25.39 
 
 		 310 aa  60.5  0.00000004  Psychromonas ingrahamii 37  Bacteria  normal  1  hitchhiker  0.00319099 
 
 
-
 
NC_008392  Bamb_5760  substrate-binding region of ABC-type glycine betaine transport system  22.79 
 
 		 293 aa  57.4  0.0000003  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_1438  substrate-binding region of ABC-type glycine betaine transport system  26.09 
 
 		 321 aa  52.8  0.000009  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0879571  normal  0.595095 
 
 
-
 
NC_004311  BRA0738  glycine betaine/L-proline ABC transporter, periplasmic glycine betaine-binding protein, putative  25.53 
 
 		 288 aa  52  0.00001  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_010625  Bphy_6868  substrate-binding region of ABC-type glycine betaine transport system  21.98 
 
 		 293 aa  50.4  0.00004  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_6174  hypothetical protein  22.4 
 
 		 312 aa  49.7  0.00007  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009668  Oant_3887  substrate-binding region of ABC-type glycine betaine transport system  24 
 
 		 288 aa  48.1  0.0002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.326958  n/a   
 
 
-
 
NC_008463  PA14_71160  hypothetical protein  22.33 
 
 		 312 aa  48.5  0.0002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_2775  glycine betaine/L-proline ABC transporter, periplasmic binding protein, putative  23.83 
 
 		 374 aa  47  0.0005  Pseudomonas putida KT2440  Bacteria  normal  0.475032  normal  1 
 
 
-
 
NC_007492  Pfl01_2780  substrate-binding region of ABC-type glycine betaine transport system  20.55 
 
 		 325 aa  45.8  0.001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_2313  substrate-binding region of ABC-type glycine betaine transport system  25.12 
 
 		 308 aa  45.1  0.002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011370  Rleg2_6146  Substrate-binding region of ABC-type glycine betaine transport system  27.27 
 
 		 328 aa  44.3  0.003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.485636 
 
 
-
 
NC_013440  Hoch_5464  Substrate-binding region of ABC-type glycine betaine transport system  21.94 
 
 		 312 aa  43.5  0.005  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.102731 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>