| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0945 |
|---|
| Symbol | |
|---|
| ID | 4579656 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 927765 |
|---|
| End bp | 928766 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639768266 |
|---|
| Product | substrate-binding region of ABC-type glycine betaine transport system |
|---|
| Protein accession | YP_914752 |
|---|
| Protein GI | 119383696 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.249192 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAT CCTATCTTCT CGGCACCGCC TTCGCGCTGC CCTTCCTGGC GCTGGCCGGC
CCCGCCTCGG CCGATTGCGG CAGCCTGACC ATCGCCAGCA TGAACTGGCA GAGCGCCGAG
CTTGCCGCGG CGCTGGACGC CTTCGTGCTG GGCAACGGCT ATGGCTGCAC CGTCGAGGTG
ATCCAGGGCG ACACGGTGCC GACGCTGACC TCGATGGTGG AGAAGGGCCA GCCCGAGGTG
GCGCCGGAAG GCTGGGTCGA CCTGGTGCCG GAGGTCATCC AGTCGGGGCT GGCCGAGGAC
CGGATCGTCG TGGCCGGCGA CATCCTGACC GACGGCGCCG TCCAGGGCTG GTGGATCCCG
AAATACCTGG CCGACGCCAA TCCCGAGCTG AAGACCATCG ACGACGTGCT GGCACGGCCC
GACCTGTTCC CCGATCCCGA GGATGCCTCG AAGGGCGCCA TCTTCAACGG CCCGGCGGGC
TGGGGCGGCA CGGTGATCAC CAGCCAGCTC TACAAGGCCT TCGGCGCCGA GGCGGCGGGG
TTCAACCTGG TCGACACCGG CTCGGCCGCC GGGCTGGACG GCTCGATCGC GCGCGCCTAC
GAGCGCCAGC AGGGCTGGGT CGGCTATTAC TGGGCGCCGA CCGCGCTTCT GGGCCGCTAC
GAGATGGTCC GGCTGGAGCA CGGCGTGGCG CTGGACATGG ACGAGTGGCA GAACTGCACC
TCGAATGCCG ATTGCGCCGA GCCGAAGAAG AACGACTGGC CCACCGACAA GGTGCAGACC
GTCGTTGCCA AGGGCTTTGC CGACGCCGCC CCGCCCGAGG TGATGGACTA CCTGTCCAGG
CGCTCCTGGT CGAACGACAC CGTGAACGCG CTGATGGCCT GGATGACCGA CAACCAGGCC
CAGGGCGAGG ACGGCGCCAA GGAGTTCCTG CGGGGCAACG AGGCGACCTG GACCGAATGG
GTCACGCCCG AGGCCGCCGA GAAGATCAAG GCGGCGCTCT GA
|
|---|
| Protein sequence | MKRSYLLGTA FALPFLALAG PASADCGSLT IASMNWQSAE LAAALDAFVL GNGYGCTVEV
IQGDTVPTLT SMVEKGQPEV APEGWVDLVP EVIQSGLAED RIVVAGDILT DGAVQGWWIP
KYLADANPEL KTIDDVLARP DLFPDPEDAS KGAIFNGPAG WGGTVITSQL YKAFGAEAAG
FNLVDTGSAA GLDGSIARAY ERQQGWVGYY WAPTALLGRY EMVRLEHGVA LDMDEWQNCT
SNADCAEPKK NDWPTDKVQT VVAKGFADAA PPEVMDYLSR RSWSNDTVNA LMAWMTDNQA
QGEDGAKEFL RGNEATWTEW VTPEAAEKIK AAL
|
|---|
| |