83 homologs were found in PanDaTox collection
for query gene Pden_1195 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008686  Pden_1195  substrate-binding region of ABC-type glycine betaine transport system  100 
 
 		 333 aa  676    Paracoccus denitrificans PD1222  Bacteria  normal  0.353421  normal  1 
 
 
-
 
NC_008686  Pden_0945  substrate-binding region of ABC-type glycine betaine transport system  100 
 
 		 333 aa  676    Paracoccus denitrificans PD1222  Bacteria  normal  0.249192  normal  1 
 
 
-
 
NC_009636  Smed_0650  substrate-binding region of ABC-type glycine betaine transport system  67.47 
 
 		 332 aa  472  1e-132  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.324621 
 
 
-
 
NC_012848  Rleg_4822  Substrate-binding region of ABC-type glycine betaine transport system  65.36 
 
 		 333 aa  458  9.999999999999999e-129  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011368  Rleg2_4910  Substrate-binding region of ABC-type glycine betaine transport system  65.06 
 
 		 333 aa  456  1e-127  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009620  Smed_4889  substrate-binding region of ABC-type glycine betaine transport system  64.63 
 
 		 333 aa  439  9.999999999999999e-123  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.64177 
 
 
-
 
NC_011369  Rleg2_2919  Substrate-binding region of ABC-type glycine betaine transport system  60.62 
 
 		 333 aa  404  1.0000000000000001e-112  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0603439  normal  1 
 
 
-
 
NC_011989  Avi_2573  ABC transporter substrate binding protein  50.3 
 
 		 332 aa  359  4e-98  Agrobacterium vitis S4  Bacteria  normal  0.0219871  n/a   
 
 
-
 
NC_009636  Smed_1767  substrate-binding region of ABC-type glycine betaine transport system  50.16 
 
 		 332 aa  338  8e-92  Sinorhizobium medicae WSM419  Bacteria  normal  0.473646  normal  0.0264882 
 
 
-
 
NC_007494  RSP_3059  ABC proline/glycine betaine transporter, periplasmic substrate-binding protein  53.87 
 
 		 333 aa  337  9.999999999999999e-92  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.78778  n/a   
 
 
-
 
NC_008687  Pden_3856  substrate-binding region of ABC-type glycine betaine transport system  52.16 
 
 		 331 aa  337  1.9999999999999998e-91  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.215076 
 
 
-
 
NC_009050  Rsph17029_3787  substrate-binding region of ABC-type glycine betaine transport system  53.54 
 
 		 333 aa  335  5.999999999999999e-91  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.347149 
 
 
-
 
NC_012850  Rleg_2382  Substrate-binding region of ABC-type glycine betaine transport system  45.32 
 
 		 331 aa  330  3e-89  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0539771  hitchhiker  0.00933627 
 
 
-
 
NC_011369  Rleg2_2138  Substrate-binding region of ABC-type glycine betaine transport system  45.02 
 
 		 331 aa  328  1.0000000000000001e-88  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0458223  normal  0.188194 
 
 
-
 
NC_010506  Swoo_1845  substrate-binding region of ABC-type glycine betaine transport system  46.65 
 
 		 334 aa  327  2.0000000000000001e-88  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00000186809  normal  0.0102549 
 
 
-
 
NC_009428  Rsph17025_2828  substrate-binding region of ABC-type glycine betaine transport system  52.03 
 
 		 333 aa  326  3e-88  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.23634 
 
 
-
 
NC_009901  Spea_0257  substrate-binding region of ABC-type glycine betaine transport system  47.76 
 
 		 334 aa  317  2e-85  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_4235  ABC transporter substrate-binding protein  48 
 
 		 334 aa  313  1.9999999999999998e-84  Shewanella sediminis HAW-EB3  Bacteria  normal  0.663539  hitchhiker  0.000000168008 
 
 
-
 
NC_009784  VIBHAR_06562  hypothetical protein  45.98 
 
 		 330 aa  308  6.999999999999999e-83  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_001569  putative periplasmic substrate-binding protein  44.73 
 
 		 331 aa  297  2e-79  Vibrio sp. Ex25  Bacteria  normal  0.496991  n/a   
 
 
-
 
NC_003910  CPS_4933  amino acid ABC transporter, periplasmic amino acid-binding protein  35.74 
 
 		 323 aa  238  1e-61  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1285  Substrate-binding region of ABC-type glycine betaine transport system  32.8 
 
 		 334 aa  172  7.999999999999999e-42  Meiothermus ruber DSM 1279  Bacteria  normal  0.435568  normal  0.230718 
 
 
-
 
NC_007969  Pcryo_1086  substrate-binding region of ABC-type glycine betaine transport system  31.82 
 
 		 646 aa  171  2e-41  Psychrobacter cryohalolentis K5  Bacteria  normal  0.809733  normal  0.592465 
 
 
-
 
NC_009524  PsycPRwf_1376  substrate-binding region of ABC-type glycine betaine transport system  30.89 
 
 		 652 aa  165  1.0000000000000001e-39  Psychrobacter sp. PRwf-1  Bacteria  normal  1  hitchhiker  0.000369923 
 
 
-
 
NC_008254  Meso_2543  substrate-binding region of ABC-type glycine betaine transport system  33.23 
 
 		 342 aa  160  2e-38  Chelativorans sp. BNC1  Bacteria  normal  0.221502  n/a   
 
 
-
 
NC_007492  Pfl01_3319  substrate-binding region of ABC-type glycine betaine transport system  28.44 
 
 		 337 aa  152  5e-36  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_4344  substrate-binding region of ABC-type glycine betaine transport system  29.29 
 
 		 337 aa  150  3e-35  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_5836  hypothetical protein  30 
 
 		 356 aa  150  3e-35  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_67300  putative binding protein component of ABC transporter  28.57 
 
 		 322 aa  147  2.0000000000000003e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_67400  putative ABC transporter, periplasmic substrate-binding protein  28.79 
 
 		 340 aa  147  3e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_5830  ABC transporter periplasmic binding protein  28.99 
 
 		 322 aa  146  5e-34  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_2363  substrate-binding region of ABC-type glycine betaine transport system  28.98 
 
 		 338 aa  144  3e-33  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_3558  substrate-binding region of ABC-type glycine betaine transport system  27.76 
 
 		 338 aa  142  6e-33  Pseudomonas putida KT2440  Bacteria  normal  0.561868  normal  1 
 
 
-
 
NC_009512  Pput_2216  substrate-binding region of ABC-type glycine betaine transport system  27.46 
 
 		 338 aa  142  6e-33  Pseudomonas putida F1  Bacteria  normal  0.228946  normal  1 
 
 
-
 
NC_008346  Swol_1738  ABC transporter substrate-binding protein  30.75 
 
 		 340 aa  142  9.999999999999999e-33  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0735907  n/a   
 
 
-
 
NC_007005  Psyr_3778  substrate-binding region of ABC-type glycine betaine transport system  27.35 
 
 		 337 aa  141  9.999999999999999e-33  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.110017 
 
 
-
 
NC_007005  Psyr_4829  substrate-binding region of ABC-type glycine betaine transport system  28.66 
 
 		 322 aa  139  7e-32  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.93299 
 
 
-
 
NC_009636  Smed_2583  substrate-binding region of ABC-type glycine betaine transport system  28.97 
 
 		 344 aa  139  8.999999999999999e-32  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.201596 
 
 
-
 
NC_004578  PSPTO_5271  histidine transporter, periplasmic histidine-binding protein  28.03 
 
 		 322 aa  136  5e-31  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_009719  Plav_1066  substrate-binding region of ABC-type glycine betaine transport system  30.3 
 
 		 633 aa  132  1.0000000000000001e-29  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_1600  ABC transporter, periplasmic substrate-binding protein, putative  28.03 
 
 		 337 aa  126  5e-28  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.865849  n/a   
 
 
-
 
NC_009832  Spro_0802  substrate-binding region of ABC-type glycine betaine transport system  26.67 
 
 		 321 aa  125  1e-27  Serratia proteamaculans 568  Bacteria  normal  0.0332812  normal  1 
 
 
-
 
NC_007492  Pfl01_0362  substrate-binding region of ABC-type glycine betaine transport system  27.49 
 
 		 322 aa  123  5e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.376501  normal  1 
 
 
-
 
NC_010718  Nther_2048  Substrate-binding region of ABC-type glycine betaine transport system  27.35 
 
 		 341 aa  118  1.9999999999999998e-25  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0715987  decreased coverage  0.00000000000901879 
 
 
-
 
NC_007511  Bcep18194_B2845  ABC proline/glycine betaine transporter, periplasmic ligand binding protein  26.42 
 
 		 345 aa  117  3.9999999999999997e-25  Burkholderia sp. 383  Bacteria  normal  1  normal  0.894091 
 
 
-
 
NC_009380  Strop_1643  substrate-binding region of ABC-type glycine betaine transport system  25 
 
 		 323 aa  79.3  0.00000000000008  Salinispora tropica CNB-440  Bacteria  normal  0.010471  normal  1 
 
 
-
 
NC_009953  Sare_1628  substrate-binding region of ABC-type glycine betaine transport system  24.7 
 
 		 324 aa  79.3  0.00000000000009  Salinispora arenicola CNS-205  Bacteria  normal  0.634582  normal  1 
 
 
-
 
NC_013595  Sros_1794  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  24.62 
 
 		 330 aa  75.1  0.000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009953  Sare_3224  substrate-binding region of ABC-type glycine betaine transport system  23.51 
 
 		 323 aa  73.2  0.000000000007  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011370  Rleg2_6171  Substrate-binding region of ABC-type glycine betaine transport system  26.32 
 
 		 318 aa  68.9  0.0000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.367394 
 
 
-
 
NC_014165  Tbis_1134  glycine betaine ABC transporter substrate-binding protein  20.92 
 
 		 317 aa  65.9  0.0000000009  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.71375 
 
 
-
 
NC_013595  Sros_1793  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  20.55 
 
 		 308 aa  62  0.00000001  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008751  Dvul_0958  substrate-binding region of ABC-type glycine betaine transport system  24.53 
 
 		 285 aa  61.2  0.00000003  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.00282078  normal  0.248441 
 
 
-
 
NC_007492  Pfl01_2780  substrate-binding region of ABC-type glycine betaine transport system  25.23 
 
 		 325 aa  58.5  0.0000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_2396  Substrate-binding region of ABC-type glycine betaine transport system  20.58 
 
 		 314 aa  54.7  0.000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.83747  hitchhiker  0.000913379 
 
 
-
 
NC_011769  DvMF_1043  Substrate-binding region of ABC-type glycine betaine transport system  25.35 
 
 		 287 aa  53.5  0.000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  1 
 
 
-
 
NC_011883  Ddes_0822  Substrate-binding region of ABC-type glycine betaine transport system  24.23 
 
 		 287 aa  53.9  0.000004  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  1  n/a   
 
 
-
 
NC_004311  BRA0738  glycine betaine/L-proline ABC transporter, periplasmic glycine betaine-binding protein, putative  23.25 
 
 		 288 aa  53.1  0.000007  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_4895  putative ABC transporter, substrate-binding protein  27.42 
 
 		 318 aa  52.4  0.00001  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_008392  Bamb_5760  substrate-binding region of ABC-type glycine betaine transport system  25.25 
 
 		 293 aa  52  0.00001  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009668  Oant_3887  substrate-binding region of ABC-type glycine betaine transport system  26.84 
 
 		 288 aa  50.8  0.00003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.326958  n/a   
 
 
-
 
NC_009656  PSPA7_6163  hypothetical protein  22.81 
 
 		 312 aa  50.4  0.00004  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_71030  hypothetical protein  22.5 
 
 		 312 aa  49.3  0.00009  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_71160  hypothetical protein  26.09 
 
 		 312 aa  48.5  0.0001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_2775  glycine betaine/L-proline ABC transporter, periplasmic binding protein, putative  24.11 
 
 		 374 aa  48.5  0.0002  Pseudomonas putida KT2440  Bacteria  normal  0.475032  normal  1 
 
 
-
 
NC_009656  PSPA7_6174  hypothetical protein  25.67 
 
 		 312 aa  48.5  0.0002  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_0025  substrate-binding region of ABC-type glycine betaine transport system  21.91 
 
 		 305 aa  48.1  0.0002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.106861  normal  1 
 
 
-
 
NC_010625  Bphy_6868  substrate-binding region of ABC-type glycine betaine transport system  23.74 
 
 		 293 aa  47  0.0004  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_2313  substrate-binding region of ABC-type glycine betaine transport system  23.93 
 
 		 308 aa  45.8  0.001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_2490  substrate-binding region of ABC-type glycine betaine transport system  24.6 
 
 		 278 aa  45.1  0.002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.962073 
 
 
-
 
NC_009668  Oant_2920  substrate-binding region of ABC-type glycine betaine transport system  21.91 
 
 		 308 aa  45.1  0.002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_0485  substrate-binding region of ABC-type glycine betaine transport system  22.67 
 
 		 314 aa  45.1  0.002  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_3058  glycine betaine ABC transporter, periplasmic glycine betaine-binding protein  22.38 
 
 		 325 aa  44.3  0.003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.302341  n/a   
 
 
-
 
NC_009439  Pmen_0063  substrate-binding region of ABC-type glycine betaine transport system  22.8 
 
 		 306 aa  44.3  0.003  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_5238  substrate-binding region of ABC-type glycine betaine transport system  26.67 
 
 		 315 aa  44.3  0.003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.848607  normal  0.0231703 
 
 
-
 
NC_008709  Ping_2073  substrate-binding region of ABC-type glycine betaine transport system  25.23 
 
 		 310 aa  43.9  0.004  Psychromonas ingrahamii 37  Bacteria  normal  0.251042  normal  0.729322 
 
 
-
 
NC_004578  PSPTO_0464  glycine betaine/L-proline ABC transporter, periplasmic substrate-binding protein  22.78 
 
 		 315 aa  43.9  0.004  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_4709  substrate-binding region of ABC-type glycine betaine transport system  22.78 
 
 		 315 aa  43.5  0.005  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_0321  choline ABC transporter, periplasmic binding protein  26.06 
 
 		 315 aa  43.5  0.005  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007955  Mbur_0503  ABC glycine betaine/L-proline transporter, substrate-binding subunit  22.53 
 
 		 290 aa  43.1  0.007  Methanococcoides burtonii DSM 6242  Archaea  normal  0.123581  n/a   
 
 
-
 
NC_013757  Gobs_4217  Substrate-binding region of ABC-type glycine betaine transport system  25.99 
 
 		 319 aa  42.7  0.008  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_009512  Pput_0316  substrate-binding region of ABC-type glycine betaine transport system  25.45 
 
 		 315 aa  42.7  0.008  Pseudomonas putida F1  Bacteria  normal  0.617924  normal  0.0420722 
 
 
-
 
NC_002947  PP_0296  glycine betaine/L-proline ABC transporter, periplasmic binding protein  25.45 
 
 		 315 aa  42.7  0.008  Pseudomonas putida KT2440  Bacteria  normal  1  hitchhiker  0.000206195 
 
 
-
 
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