Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0321 |
Symbol | |
ID | 5868061 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 371231 |
End bp | 372178 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641545403 |
Product | choline ABC transporter, periplasmic binding protein |
Protein accession | YP_001666570 |
Protein GI | 167031339 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGGTT CACCCTCGCT GTTGCTGGTT GCGTTGCTGT CCACGCCATT GCTGGCCCAG GCCGCCGAAC CCGAGCAGTG TCAGACGGTA CGTTTCTCCG ATGTCGGCTG GACCGACATC ACAGTCACGA CCGCGACCAC CAGCGTTGTG CTCGAAGCCC TGGGTTACAA AACCCACACC ACCATGATCT CGGTACCGGT GACCTACAAG TCGCTGGCCA CCGGCAAGGA CCTGGACGTG TTTCTCGGCA ACTGGATGCC GACCATGGAA AACGACATCA AGCAGTACCG CGACGCCGGC ACGGTGGAAA CCGTGCGCGC CAACCTGGAA AACGCCAAGT ACACCTTGGC CGTGCCCCAG GCGCTGTATG ACAAGGGCCT GAAGGATTTC AGCGATATTC CCAAGTTCAA GAAAGAACTC GACAGCAAGA TCTACGGCAT CGAACCCGGC AACGATGGCA ACCGCACCAT CCAGAGCATG ATCGACAAGA ACGCCTTCGG CCTGAAGGAC GCCGGTTTCA AGATCGTGCA ATCGAGCGAG GCCGGCATGC TGTCGCAGGT CGACCGCGCG CAGAAGCGTG GCGAAGCGCT GGTGTTCCTG GGCTGGGAAC CGCACCCGAT GAACACCCGC TTCAAGATGC AGTACCTGAC CGGCGGGGAC GAATTCTTCG GCCCCGACTT CGGCAAGGCC ACCGTGCTGA CCAACACCCG CAAGGGCTAC GCGCAGGAGT GCAGCAACGT TGGCCAGCTG TTGAAGAACC TGTCGTTCGA GCTCAAGGAT GAAAGCACCA TGATGGGCTA TGTCCTGGAC GACAAGATGA AACCCGAAGC CGCCGCCAAG AAATGGATCA AGGACAACCC AGGCAAGCTG GATGCCTGGC TGGCCGGCGT GACCACCGTG GATGGCAAAC CTGGCCTGGA GGCGGCCAAG GCCAAGCTCA CGCAATAA
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Protein sequence | MKGSPSLLLV ALLSTPLLAQ AAEPEQCQTV RFSDVGWTDI TVTTATTSVV LEALGYKTHT TMISVPVTYK SLATGKDLDV FLGNWMPTME NDIKQYRDAG TVETVRANLE NAKYTLAVPQ ALYDKGLKDF SDIPKFKKEL DSKIYGIEPG NDGNRTIQSM IDKNAFGLKD AGFKIVQSSE AGMLSQVDRA QKRGEALVFL GWEPHPMNTR FKMQYLTGGD EFFGPDFGKA TVLTNTRKGY AQECSNVGQL LKNLSFELKD ESTMMGYVLD DKMKPEAAAK KWIKDNPGKL DAWLAGVTTV DGKPGLEAAK AKLTQ
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