| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0485 |
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| Symbol | |
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| ID | 5108404 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 519847 |
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| End bp | 520791 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640501698 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_001185987 |
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| Protein GI | 146305522 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACGA TCAAGACCAC CGCCGCCTTC GGTCTGCTGG CCTGCCTGCT GATGCAGGGC
GCCATGGCCG CCGAGCCGGC CAGCTGCAAG CAGGTGCGCT TCGCCGAAAT CGGCTGGGCC
GATATCGCCG CCACCACCGG CGTGGCCATG ACCCTGGTCG AAGGCCTGGG TTATCAGCCG
CGCAAGATCA TGGCCTCGGT TCCCATCGCC TTCACCGGGG TGAAGAACGG CCAGGTCGAT
GCCTTCCTCG GCTACTGGGC GCCCTCGATG GACGCGGTGA TCGAGCCGTT CCTCAAGGAC
GGCGGCGTCA AGGTCCTGGA GAAGCCCAAT CTCGAAGGCG CCAAGTACAC CCTGGCAGTG
CCCACCTATG CCGCCGAGGC CGGCCTGAAG AGCTTTCAGG ACATCGCCAA GTTCAAGGAT
CAGCTGGGCG GCAAGATCTA CGGCATCGAG CCCGGCAATG ACGGCAACCT GCTGATCGAA
GGCATGATCA AGAGCGATCA GTTCGGCCTC GGCAGCTTCC GCATGATCGA GTCCAGCGAA
GCCGGCATGC TGGTGCAGGT ATCGCGCGCC ATCAAGAAGA AGGAGCCGGT GGTGTTCCTC
GGCTGGGCGC CGCACCCGAT GAACACCCAG CACGACATCA CCTACCTGTC CGGTGGCGAC
GACGTGTTCG GCCCCGACTA TGGCGCAGCC AAGGTCTACA CCGTGGTGCC GCCGGATTAC
GAAGCGCGCT GCGCCAACGT CGGCAAGCTG CTGAACAACC TGCAGTTCAC CGTCGAGATC
GAAAGCCAGC TGATGGAAAA GGTGCTGGAG AAGGAAAACC CGCAGAACGT CGCCAAGGAG
TGGATCAAGG CCAACCCGGC GATCCTCGAC CAGTGGCTGA GCGGCGTGAC CACCTTCGAC
GGACAGGACG GCGTCGCCGC CGTGAAGAAA CACGTCGGGC TGTAA
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| Protein sequence | MKTIKTTAAF GLLACLLMQG AMAAEPASCK QVRFAEIGWA DIAATTGVAM TLVEGLGYQP
RKIMASVPIA FTGVKNGQVD AFLGYWAPSM DAVIEPFLKD GGVKVLEKPN LEGAKYTLAV
PTYAAEAGLK SFQDIAKFKD QLGGKIYGIE PGNDGNLLIE GMIKSDQFGL GSFRMIESSE
AGMLVQVSRA IKKKEPVVFL GWAPHPMNTQ HDITYLSGGD DVFGPDYGAA KVYTVVPPDY
EARCANVGKL LNNLQFTVEI ESQLMEKVLE KENPQNVAKE WIKANPAILD QWLSGVTTFD
GQDGVAAVKK HVGL
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