Gene PSPTO_0464 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_0464 
Symbol 
ID1182073 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp509006 
End bp509953 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content57% 
IMG OID637391832 
Productglycine betaine/L-proline ABC transporter, periplasmic substrate-binding protein 
Protein accessionNP_790313 
Protein GI28867694 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components 
TIGRFAM ID[TIGR03414] choline ABC transporter, periplasmic binding protein 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGGTT CCAAATCGTT GCTGTTGGCC GCCACGCTCT GTATGCCGGT GCTTGCTCAG 
GCAGCCGAGC CAGAGGCCTG TCATACGGTC AACTTCTCCG ACGTAGGCTG GACTGACATC 
ACCGTCACCA CAGCGGTGAC CAGCGCCGTA CTCGAGTCAC TGGGTTACAA GACCAAGACC 
ACCATGATTT CCGTACCGGT GACCTACAAG TCGCTGGCAG ATGGCAAGAA CATGGACGTT 
TTCCTCGGCA ACTGGATGCC GACCATGGAA AACGACATCA AGCCTTATCG CGAAGCCGGC 
ACTGTCGAAA CCGTGCGCGC CAACCTCGAA AACGCCAAAT ACACCCTGGC CGTGCCGCAA 
GCGCTCTACG ACAAAGGCCT GCATGACTTC GCCGACATCA CCAAATTCAA GAAAGAACTG 
GGCGGCAAGA TCTACGGTAT CGAACCCGGC AACGACGGCA ACCGCCTGAT CCAGAGCATG 
ATCGACAAGA ACGCCTTCGG CCTCAAAGAT GCGGGCTTCA AGGTGGTGGA ATCCAGCGAG 
GCGGCCATGC TCTCGCAGGT TGATCGCGCC GTGAAACGCA AAAACGATGT GGTGTTCCTG 
GGCTGGGAAC CGCACCCGAT GAACACACGC TTCAAGATGA AATATCTTAC CGGCGGCGAT 
GACTTTTTCG GCCCCAACTA TGGCCAGGCG ACTATCTACA CCAACACCCG CAAAGGCTAC 
AGTCAGGAAT GCAGCAACGT AGGCCAGTTG CTCAAGAACC TGTCCTTCAC GCTGGAAATG 
GAAAGCACCC TGATGGGCAA TGTGCTGGAT GACAAGACCA AGCCTGATGC CGCCGCCAAG 
GCGTGGATCA AGAAAAACCC GCAAGTGCTC GACACCTGGC TGGCAGGCGT GACCACCGTG 
GATGGCAAAC CAGGCCTGGA GGCAGCCAAG GCCAAGTTGA CCCAGTAA
 
Protein sequence
MKGSKSLLLA ATLCMPVLAQ AAEPEACHTV NFSDVGWTDI TVTTAVTSAV LESLGYKTKT 
TMISVPVTYK SLADGKNMDV FLGNWMPTME NDIKPYREAG TVETVRANLE NAKYTLAVPQ 
ALYDKGLHDF ADITKFKKEL GGKIYGIEPG NDGNRLIQSM IDKNAFGLKD AGFKVVESSE 
AAMLSQVDRA VKRKNDVVFL GWEPHPMNTR FKMKYLTGGD DFFGPNYGQA TIYTNTRKGY 
SQECSNVGQL LKNLSFTLEM ESTLMGNVLD DKTKPDAAAK AWIKKNPQVL DTWLAGVTTV 
DGKPGLEAAK AKLTQ