63 homologs were found in PanDaTox collection
for query gene Pden_3856 on replicon NC_008687
Organism: Paracoccus denitrificans PD1222



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008687  Pden_3856  substrate-binding region of ABC-type glycine betaine transport system  100 
 
 		 331 aa  676    Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.215076 
 
 
-
 
NC_011989  Avi_2573  ABC transporter substrate binding protein  58.73 
 
 		 332 aa  414  1e-114  Agrobacterium vitis S4  Bacteria  normal  0.0219871  n/a   
 
 
-
 
NC_007494  RSP_3059  ABC proline/glycine betaine transporter, periplasmic substrate-binding protein  63.35 
 
 		 333 aa  413  1e-114  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.78778  n/a   
 
 
-
 
NC_009050  Rsph17029_3787  substrate-binding region of ABC-type glycine betaine transport system  62.73 
 
 		 333 aa  410  1e-113  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.347149 
 
 
-
 
NC_009636  Smed_1767  substrate-binding region of ABC-type glycine betaine transport system  57.93 
 
 		 332 aa  384  1e-105  Sinorhizobium medicae WSM419  Bacteria  normal  0.473646  normal  0.0264882 
 
 
-
 
NC_009428  Rsph17025_2828  substrate-binding region of ABC-type glycine betaine transport system  61.07 
 
 		 333 aa  381  1e-105  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.23634 
 
 
-
 
NC_012850  Rleg_2382  Substrate-binding region of ABC-type glycine betaine transport system  52.41 
 
 		 331 aa  363  2e-99  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0539771  hitchhiker  0.00933627 
 
 
-
 
NC_011369  Rleg2_2138  Substrate-binding region of ABC-type glycine betaine transport system  52.11 
 
 		 331 aa  362  5.0000000000000005e-99  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0458223  normal  0.188194 
 
 
-
 
NC_009636  Smed_0650  substrate-binding region of ABC-type glycine betaine transport system  50.6 
 
 		 332 aa  343  2e-93  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.324621 
 
 
-
 
NC_008686  Pden_1195  substrate-binding region of ABC-type glycine betaine transport system  52.16 
 
 		 333 aa  337  1.9999999999999998e-91  Paracoccus denitrificans PD1222  Bacteria  normal  0.353421  normal  1 
 
 
-
 
NC_008686  Pden_0945  substrate-binding region of ABC-type glycine betaine transport system  52.16 
 
 		 333 aa  337  1.9999999999999998e-91  Paracoccus denitrificans PD1222  Bacteria  normal  0.249192  normal  1 
 
 
-
 
NC_012848  Rleg_4822  Substrate-binding region of ABC-type glycine betaine transport system  48.65 
 
 		 333 aa  336  2.9999999999999997e-91  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011368  Rleg2_4910  Substrate-binding region of ABC-type glycine betaine transport system  49.25 
 
 		 333 aa  335  5e-91  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009620  Smed_4889  substrate-binding region of ABC-type glycine betaine transport system  47.45 
 
 		 333 aa  325  7e-88  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.64177 
 
 
-
 
NC_009784  VIBHAR_06562  hypothetical protein  47.4 
 
 		 330 aa  318  7.999999999999999e-86  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_1845  substrate-binding region of ABC-type glycine betaine transport system  47.76 
 
 		 334 aa  318  9e-86  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00000186809  normal  0.0102549 
 
 
-
 
NC_011369  Rleg2_2919  Substrate-binding region of ABC-type glycine betaine transport system  47.75 
 
 		 333 aa  318  1e-85  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0603439  normal  1 
 
 
-
 
NC_009901  Spea_0257  substrate-binding region of ABC-type glycine betaine transport system  47.27 
 
 		 334 aa  312  3.9999999999999997e-84  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_013457  VEA_001569  putative periplasmic substrate-binding protein  45.63 
 
 		 331 aa  307  2.0000000000000002e-82  Vibrio sp. Ex25  Bacteria  normal  0.496991  n/a   
 
 
-
 
NC_009831  Ssed_4235  ABC transporter substrate-binding protein  45.33 
 
 		 334 aa  296  3e-79  Shewanella sediminis HAW-EB3  Bacteria  normal  0.663539  hitchhiker  0.000000168008 
 
 
-
 
NC_003910  CPS_4933  amino acid ABC transporter, periplasmic amino acid-binding protein  36.42 
 
 		 323 aa  221  9.999999999999999e-57  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1285  Substrate-binding region of ABC-type glycine betaine transport system  31.16 
 
 		 334 aa  160  3e-38  Meiothermus ruber DSM 1279  Bacteria  normal  0.435568  normal  0.230718 
 
 
-
 
NC_008254  Meso_2543  substrate-binding region of ABC-type glycine betaine transport system  31.99 
 
 		 342 aa  146  6e-34  Chelativorans sp. BNC1  Bacteria  normal  0.221502  n/a   
 
 
-
 
NC_009656  PSPA7_5836  hypothetical protein  29.43 
 
 		 356 aa  145  1e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_67400  putative ABC transporter, periplasmic substrate-binding protein  28.53 
 
 		 340 aa  140  1.9999999999999998e-32  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010718  Nther_2048  Substrate-binding region of ABC-type glycine betaine transport system  32.8 
 
 		 341 aa  138  1e-31  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0715987  decreased coverage  0.00000000000901879 
 
 
-
 
NC_007492  Pfl01_3319  substrate-binding region of ABC-type glycine betaine transport system  29.25 
 
 		 337 aa  138  2e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007969  Pcryo_1086  substrate-binding region of ABC-type glycine betaine transport system  29.25 
 
 		 646 aa  135  6.0000000000000005e-31  Psychrobacter cryohalolentis K5  Bacteria  normal  0.809733  normal  0.592465 
 
 
-
 
NC_009719  Plav_1066  substrate-binding region of ABC-type glycine betaine transport system  28.92 
 
 		 633 aa  134  3e-30  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008346  Swol_1738  ABC transporter substrate-binding protein  28.66 
 
 		 340 aa  130  4.0000000000000003e-29  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0735907  n/a   
 
 
-
 
NC_009512  Pput_2216  substrate-binding region of ABC-type glycine betaine transport system  27.03 
 
 		 338 aa  126  6e-28  Pseudomonas putida F1  Bacteria  normal  0.228946  normal  1 
 
 
-
 
NC_007005  Psyr_3778  substrate-binding region of ABC-type glycine betaine transport system  27.19 
 
 		 337 aa  125  1e-27  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.110017 
 
 
-
 
NC_009524  PsycPRwf_1376  substrate-binding region of ABC-type glycine betaine transport system  28.27 
 
 		 652 aa  124  3e-27  Psychrobacter sp. PRwf-1  Bacteria  normal  1  hitchhiker  0.000369923 
 
 
-
 
NC_009656  PSPA7_5830  ABC transporter periplasmic binding protein  26.51 
 
 		 322 aa  124  3e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_4829  substrate-binding region of ABC-type glycine betaine transport system  27.9 
 
 		 322 aa  123  3e-27  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.93299 
 
 
-
 
NC_002947  PP_3558  substrate-binding region of ABC-type glycine betaine transport system  27.46 
 
 		 338 aa  123  4e-27  Pseudomonas putida KT2440  Bacteria  normal  0.561868  normal  1 
 
 
-
 
NC_004578  PSPTO_5271  histidine transporter, periplasmic histidine-binding protein  27.59 
 
 		 322 aa  123  4e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_4344  substrate-binding region of ABC-type glycine betaine transport system  27.06 
 
 		 337 aa  119  4.9999999999999996e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009636  Smed_2583  substrate-binding region of ABC-type glycine betaine transport system  29.66 
 
 		 344 aa  119  7.999999999999999e-26  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.201596 
 
 
-
 
NC_010322  PputGB1_2363  substrate-binding region of ABC-type glycine betaine transport system  26.91 
 
 		 338 aa  117  3.9999999999999997e-25  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_67300  putative binding protein component of ABC transporter  26.1 
 
 		 322 aa  117  3.9999999999999997e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_1600  ABC transporter, periplasmic substrate-binding protein, putative  27.94 
 
 		 337 aa  112  1.0000000000000001e-23  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.865849  n/a   
 
 
-
 
NC_009832  Spro_0802  substrate-binding region of ABC-type glycine betaine transport system  26.27 
 
 		 321 aa  112  1.0000000000000001e-23  Serratia proteamaculans 568  Bacteria  normal  0.0332812  normal  1 
 
 
-
 
NC_007511  Bcep18194_B2845  ABC proline/glycine betaine transporter, periplasmic ligand binding protein  25.87 
 
 		 345 aa  106  5e-22  Burkholderia sp. 383  Bacteria  normal  1  normal  0.894091 
 
 
-
 
NC_007492  Pfl01_0362  substrate-binding region of ABC-type glycine betaine transport system  25.37 
 
 		 322 aa  102  7e-21  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.376501  normal  1 
 
 
-
 
NC_013595  Sros_1794  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  27.43 
 
 		 330 aa  81.6  0.00000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_2396  Substrate-binding region of ABC-type glycine betaine transport system  25.88 
 
 		 314 aa  79.3  0.00000000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.83747  hitchhiker  0.000913379 
 
 
-
 
NC_009380  Strop_1643  substrate-binding region of ABC-type glycine betaine transport system  27.45 
 
 		 323 aa  79  0.0000000000001  Salinispora tropica CNB-440  Bacteria  normal  0.010471  normal  1 
 
 
-
 
NC_009953  Sare_1628  substrate-binding region of ABC-type glycine betaine transport system  26.42 
 
 		 324 aa  76.6  0.0000000000005  Salinispora arenicola CNS-205  Bacteria  normal  0.634582  normal  1 
 
 
-
 
NC_009953  Sare_3224  substrate-binding region of ABC-type glycine betaine transport system  22.04 
 
 		 323 aa  71.2  0.00000000002  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014165  Tbis_1134  glycine betaine ABC transporter substrate-binding protein  22.77 
 
 		 317 aa  64.3  0.000000003  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.71375 
 
 
-
 
NC_013595  Sros_1793  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  23.17 
 
 		 308 aa  62.4  0.00000001  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_2780  substrate-binding region of ABC-type glycine betaine transport system  25.35 
 
 		 325 aa  56.2  0.0000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_2775  glycine betaine/L-proline ABC transporter, periplasmic binding protein, putative  24.68 
 
 		 374 aa  53.1  0.000007  Pseudomonas putida KT2440  Bacteria  normal  0.475032  normal  1 
 
 
-
 
NC_011370  Rleg2_6171  Substrate-binding region of ABC-type glycine betaine transport system  24.78 
 
 		 318 aa  49.7  0.00008  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.367394 
 
 
-
 
NC_008463  PA14_71160  hypothetical protein  26.44 
 
 		 312 aa  49.3  0.0001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_6174  hypothetical protein  26.44 
 
 		 312 aa  48.5  0.0002  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_0063  substrate-binding region of ABC-type glycine betaine transport system  22.26 
 
 		 306 aa  46.6  0.0005  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_0328  choline ABC transporter, periplasmic binding protein  24.11 
 
 		 314 aa  43.9  0.004  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009512  Pput_0324  substrate-binding region of ABC-type glycine betaine transport system  23.5 
 
 		 314 aa  43.9  0.004  Pseudomonas putida F1  Bacteria  normal  0.210112  normal  0.40501 
 
 
-
 
NC_009439  Pmen_0499  substrate-binding region of ABC-type glycine betaine transport system  27.18 
 
 		 312 aa  43.5  0.005  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011728  BbuZS7_0144  glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein  20 
 
 		 290 aa  42.7  0.009  Borrelia burgdorferi ZS7  Bacteria  normal  1  n/a   
 
 
-
 
NC_002947  PP_0304  hypothetical protein  23.5 
 
 		 322 aa  42.4  0.01  Pseudomonas putida KT2440  Bacteria  normal  1  hitchhiker  0.00268504 
 
 
-
 
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