| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1472 |
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| Symbol | |
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| ID | 8419301 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 1701352 |
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| End bp | 1702194 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645038047 |
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| Product | Substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_003198337 |
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| Protein GI | 258405595 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.338312 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00631972 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCTTGC GTAATCTCAT CGGTGTTCTC GTCGCTCTTT TTCTCGTTTG TCCGGCCGTA
GCCCAGGCCC AGCCTGAAGT AGAACTCGCC TACGTGGAAT GGGCGGAAAC CGTGGCCAGC
ACCAACGTGG TCCAAACCGT TCTGGAAGAT ATGGGCTATG ATGTCGAGAT CACACCAGTG
AGTGCCGCCG CCATGTGGCA GGCCACCGCC ACCGGCGACG TCGACGGATT CACCGGCGGC
TGGCTGCCTG TCACTCAAGG CGAATACCAT GAAAAACTCA AGGACGAGGT CGAAGTCATC
AACAAAAACC TCAATGGCGC CAAAATCGGA CTGGCCGTTC CGGAATACGT CGAGATCGAC
AGCATCGCCG AACTCAACGC CAATGCCGAG AAATTCCGGG AAGAAATCAT CGGCATCGAC
CCTGGCGCCG GCATCATGGG CAAGGCAGAA AAAGCCCTGG ACCAATACAA CATGGACAAC
ATGGAACTCG TTGCCGGTAG CGGCGCGACC ATGACCGCCG TGCTCAAGAA CCGCTATGAG
GAAAAAGAGC CGGTTGTGGT CACCGCCTGG ACCCCGCACT GGATGTTCAG CCGCTGGGAT
CTGAAATATC TCAAGGATCC CAAGGGCACT TTTGGTCAAG CCGAATACAT CGCCACCGTG
GTGCGTCCGG AACTGAAAAA CGATATGCCC AAAGTCTACA ACTTCCTCAA AAACTTTGAA
TGGACCCTGG ACGAATGCCA GCAGGTCATG CTCTGGATTG AGGATTCCAC TCCGGAAGAA
GCGGCCGAAC GCTGGGTGGA AGAGAATCCG GAAAAGGTCA AAGCCTGGAA GCAGGGCGCC
TAA
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| Protein sequence | MRLRNLIGVL VALFLVCPAV AQAQPEVELA YVEWAETVAS TNVVQTVLED MGYDVEITPV
SAAAMWQATA TGDVDGFTGG WLPVTQGEYH EKLKDEVEVI NKNLNGAKIG LAVPEYVEID
SIAELNANAE KFREEIIGID PGAGIMGKAE KALDQYNMDN MELVAGSGAT MTAVLKNRYE
EKEPVVVTAW TPHWMFSRWD LKYLKDPKGT FGQAEYIATV VRPELKNDMP KVYNFLKNFE
WTLDECQQVM LWIEDSTPEE AAERWVEENP EKVKAWKQGA
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