Gene Dhaf_2308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_2308 
Symbol 
ID7259277 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand
Start bp2492425 
End bp2493321 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content48% 
IMG OID643562195 
ProductSubstrate-binding region of ABC-type glycine betaine transport system 
Protein accessionYP_002458775 
Protein GI219668340 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.00541806 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATAC AAAAATCTTG GCCCAAAGCC CTCTTCTGGG CGCTGACAGC TCTGCTCGCC 
ATTGGGCTGA CCGGCTGTGG AGCAGCCCCC GGCAGCCCAT CCGGCAATAA AAAGACCAAC
GGCAGCGACA AAACGGTCAA TATCGGCTAT GTTAACTGGG CGGAAGCCGT AGCCGTCAGC
AACCTCTGGA AAGTTATCCT GGAAGAACAA GGTTATAAAG TAAAGATGAC AAGCCTTGAT
GCCGCTCCCC TCTTTGTGGG ACTCTCCGCA GGAAATTTAG ATATCTTCAT GGACAGCTGG
CTCCCCACTA CTCATCAAAT TTTCTGGGAT AAATATAAAA ACAAGCTGGA TGATTATGGC
GTGTGGTATA CTGCTGAAGC AAAAATCGGC CTTGTGGTTC CTGAGTATGC GGAGATCAGC
TCCATCGAAG AATTGAACGC CCACAAAGAC AGGCTCAGCG GCAGAATTAC GGGGATTGAT
CCCGGTGCCG GAATTATGAA AGCTACTGAA ACTGCTATTG ACAGCTATAA CCTGGATTTT
AACCTGATTC AAAGTTCTGA AGCCGCTATG CTGGCCGCTT TAGACAAAGC CTATCGCAAC
CAGGAATGGA TTGCCGTTAC CGGTTGGAGC CCCCATTGGA AATTCGCCAA ATACGATTTA
AAATACCTTG AAGATCCAAA GGGCAGCTAT GGCCAGTCTG AACAGATTCA CACTTTGGCC
AACAAGGAGT TTACCCAAGC TCATCCCGAA GTCGCGGCAA TGCTCAAGAA ATTTGAGCTC
AATGATCAAC AGATCGGTAC CTTGGAGGGT TATATTAACG AGGGTATGAA ACCTGAAGAA
GCGGCCCAAA AATGGATGGC TGAGAATCGG GACTTAGTGG ACAGCTGGCT CAAATAG
 
Protein sequence
MKIQKSWPKA LFWALTALLA IGLTGCGAAP GSPSGNKKTN GSDKTVNIGY VNWAEAVAVS 
NLWKVILEEQ GYKVKMTSLD AAPLFVGLSA GNLDIFMDSW LPTTHQIFWD KYKNKLDDYG
VWYTAEAKIG LVVPEYAEIS SIEELNAHKD RLSGRITGID PGAGIMKATE TAIDSYNLDF
NLIQSSEAAM LAALDKAYRN QEWIAVTGWS PHWKFAKYDL KYLEDPKGSY GQSEQIHTLA
NKEFTQAHPE VAAMLKKFEL NDQQIGTLEG YINEGMKPEE AAQKWMAENR DLVDSWLK