More than 300 homologs were found in PanDaTox collection
for query gene SO_3052 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009052  Sbal_2733  methyl-accepting chemotaxis sensory transducer  89.98 
 
 
579 aa  1079    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3052  methyl-accepting chemotaxis protein  100 
 
 
579 aa  1181    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2750  methyl-accepting chemotaxis sensory transducer  90.16 
 
 
579 aa  1061    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1626  methyl-accepting chemotaxis sensory transducer  90.16 
 
 
579 aa  1061    Shewanella baltica OS223  Bacteria  normal  0.154062  normal  0.0682347 
 
 
-
 
NC_009997  Sbal195_2826  methyl-accepting chemotaxis sensory transducer  90.33 
 
 
579 aa  1062    Shewanella baltica OS195  Bacteria  normal  normal  0.0277282 
 
 
-
 
NC_008321  Shewmr4_1436  methyl-accepting chemotaxis sensory transducer  93.26 
 
 
579 aa  1105    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1501  methyl-accepting chemotaxis sensory transducer  93.09 
 
 
579 aa  1103    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0331  methyl-accepting chemotaxis protein  46.36 
 
 
578 aa  482  1e-135  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0153  chemotaxis sensory transducer  34.7 
 
 
602 aa  293  8e-78  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_1025  methyl-accepting chemotaxis domain-containing protein  35.97 
 
 
570 aa  252  2e-65  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0126152  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1754  methyl-accepting chemotaxis domain-containing protein  35.77 
 
 
570 aa  251  3e-65  Burkholderia mallei SAVP1  Bacteria  normal  0.427555  n/a   
 
 
-
 
NC_009074  BURPS668_1794  methyl-accepting chemotaxis protein  35.77 
 
 
644 aa  250  4e-65  Burkholderia pseudomallei 668  Bacteria  normal  0.061359  n/a   
 
 
-
 
NC_006348  BMA1267  methyl-accepting chemotaxis domain-containing protein  35.77 
 
 
728 aa  250  4e-65  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1967  methyl-accepting chemotaxis domain-containing protein  35.77 
 
 
728 aa  250  5e-65  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1813  methyl-accepting chemotaxis protein  35.77 
 
 
728 aa  250  5e-65  Burkholderia pseudomallei 1106a  Bacteria  normal  0.403729  n/a   
 
 
-
 
NC_007651  BTH_I2522  methyl-accepting chemotaxis domain-containing protein  38.06 
 
 
605 aa  249  7e-65  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000107886  n/a   
 
 
-
 
NC_008836  BMA10229_A0141  methyl-accepting chemotaxis domain-containing protein  35.89 
 
 
521 aa  248  2e-64  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0779698  n/a   
 
 
-
 
NC_003910  CPS_3864  methyl-accepting chemotaxis protein  32.16 
 
 
568 aa  229  1e-58  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2015  methyl-accepting chemotaxis sensory transducer  31.66 
 
 
553 aa  192  1e-47  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_2227  methyl-accepting chemotaxis sensory transducer  29.14 
 
 
606 aa  191  2.9999999999999997e-47  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_4895  methyl-accepting chemotaxis sensory transducer  30.04 
 
 
739 aa  182  2e-44  Pseudomonas putida F1  Bacteria  normal  0.247309  normal 
 
 
-
 
NC_002947  PP_5021  methyl-accepting chemotaxis sensory transducer  30.15 
 
 
647 aa  181  2.9999999999999997e-44  Pseudomonas putida KT2440  Bacteria  normal  0.0828859  normal 
 
 
-
 
NC_009654  Mmwyl1_0130  methyl-accepting chemotaxis sensory transducer  35.28 
 
 
671 aa  181  4.999999999999999e-44  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5071  methyl-accepting chemotaxis sensory transducer  35.16 
 
 
647 aa  179  1e-43  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  35.83 
 
 
619 aa  179  1e-43  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  35.75 
 
 
629 aa  177  4e-43  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  35.56 
 
 
640 aa  177  4e-43  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  37.4 
 
 
638 aa  177  7e-43  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0861  methyl-accepting chemotaxis sensory transducer  36.76 
 
 
542 aa  176  9.999999999999999e-43  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  34.84 
 
 
639 aa  175  1.9999999999999998e-42  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  34.58 
 
 
633 aa  175  1.9999999999999998e-42  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_007614  Nmul_A2694  multi-sensor hybrid histidine kinase  37.29 
 
 
1118 aa  175  1.9999999999999998e-42  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0444  methyl-accepting chemotaxis sensory transducer  35.53 
 
 
647 aa  173  7.999999999999999e-42  Pseudomonas putida W619  Bacteria  normal  0.414929  normal 
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  33.79 
 
 
773 aa  173  7.999999999999999e-42  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_009997  Sbal195_3742  methyl-accepting chemotaxis sensory transducer  36.34 
 
 
620 aa  173  9e-42  Shewanella baltica OS195  Bacteria  normal  normal  0.35347 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  35.47 
 
 
552 aa  172  2e-41  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_009052  Sbal_0691  methyl-accepting chemotaxis sensory transducer  36.34 
 
 
620 aa  171  3e-41  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3551  methyl-accepting chemotaxis sensory transducer  36.34 
 
 
620 aa  171  3e-41  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00183884 
 
 
-
 
NC_004347  SO_3838  methyl-accepting chemotaxis protein  37.99 
 
 
620 aa  171  4e-41  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_0796  methyl-accepting chemotaxis sensory transducer  35.95 
 
 
620 aa  171  5e-41  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5160  methyl-accepting chemotaxis protein  37.5 
 
 
647 aa  170  6e-41  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.391343  n/a   
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  36.68 
 
 
621 aa  170  6e-41  Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_009665  Shew185_3619  methyl-accepting chemotaxis sensory transducer  36.04 
 
 
620 aa  170  7e-41  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2607  putative methyl-accepting chemotaxis sensory transducer  33.14 
 
 
541 aa  169  9e-41  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00122932  normal 
 
 
-
 
NC_007954  Sden_0712  chemotaxis sensory transducer  35.28 
 
 
541 aa  169  9e-41  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000566108  n/a   
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  36.07 
 
 
638 aa  169  1e-40  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  35.52 
 
 
640 aa  169  1e-40  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_008577  Shewana3_0764  methyl-accepting chemotaxis sensory transducer  36.59 
 
 
620 aa  169  2e-40  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  35.71 
 
 
620 aa  168  2e-40  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  34.44 
 
 
541 aa  168  2e-40  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  36.12 
 
 
638 aa  169  2e-40  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3174  methyl-accepting chemotaxis sensory transducer  36.59 
 
 
620 aa  169  2e-40  Shewanella sp. MR-4  Bacteria  normal  0.733563  normal  0.773778 
 
 
-
 
NC_008322  Shewmr7_0792  methyl-accepting chemotaxis sensory transducer  36.59 
 
 
620 aa  168  2.9999999999999998e-40  Shewanella sp. MR-7  Bacteria  normal  0.912748  normal  0.850506 
 
 
-
 
NC_002947  PP_1228  methyl-accepting chemotaxis transducer  34.41 
 
 
688 aa  167  4e-40  Pseudomonas putida KT2440  Bacteria  normal  normal  0.739741 
 
 
-
 
NC_007492  Pfl01_0657  chemotaxis sensory transducer, Cache sensor  31.44 
 
 
648 aa  167  4e-40  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.511779  normal 
 
 
-
 
NC_009092  Shew_2954  methyl-accepting chemotaxis sensory transducer  35.23 
 
 
620 aa  167  5e-40  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000679912  normal 
 
 
-
 
NC_009483  Gura_3063  methyl-accepting chemotaxis sensory transducer  29.8 
 
 
533 aa  167  5.9999999999999996e-40  Geobacter uraniireducens Rf4  Bacteria  normal  0.378908  n/a   
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  32.56 
 
 
541 aa  167  5.9999999999999996e-40  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_009512  Pput_1257  methyl-accepting chemotaxis sensory transducer  34.93 
 
 
688 aa  167  5.9999999999999996e-40  Pseudomonas putida F1  Bacteria  normal  0.124474  normal 
 
 
-
 
NC_007005  Psyr_5092  histidine kinase, HAMP region: chemotaxis sensory transducer  37.06 
 
 
640 aa  167  6.9999999999999995e-40  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  40.21 
 
 
638 aa  166  8e-40  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  35.82 
 
 
638 aa  166  8e-40  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_004578  PSPTO_5553  methyl-accepting chemotaxis protein  36.83 
 
 
640 aa  166  1.0000000000000001e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0379  histidine kinase, HAMP region: chemotaxis sensory transducer  36.5 
 
 
647 aa  166  1.0000000000000001e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.454626  normal 
 
 
-
 
NC_010322  PputGB1_4190  methyl-accepting chemotaxis sensory transducer  34.57 
 
 
688 aa  165  2.0000000000000002e-39  Pseudomonas putida GB-1  Bacteria  normal  0.251316  normal 
 
 
-
 
NC_009831  Ssed_3502  methyl-accepting chemotaxis sensory transducer  35.4 
 
 
620 aa  165  2.0000000000000002e-39  Shewanella sediminis HAW-EB3  Bacteria  normal  0.666992  normal  0.2901 
 
 
-
 
NC_009457  VC0395_A1023  methyl-accepting chemotaxis protein  28.82 
 
 
578 aa  165  3e-39  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2301  methyl-accepting chemotaxis sensory transducer  34.88 
 
 
632 aa  164  4.0000000000000004e-39  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  32.38 
 
 
620 aa  164  5.0000000000000005e-39  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_008322  Shewmr7_0959  methyl-accepting chemotaxis sensory transducer  31.12 
 
 
543 aa  164  5.0000000000000005e-39  Shewanella sp. MR-7  Bacteria  normal  0.656726  normal  0.666936 
 
 
-
 
NC_009457  VC0395_A2596  methyl-accepting chemotaxis protein  34.75 
 
 
564 aa  163  6e-39  Vibrio cholerae O395  Bacteria  unclonable  0.00000000000057467  n/a   
 
 
-
 
NC_009052  Sbal_2364  methyl-accepting chemotaxis sensory transducer  35.29 
 
 
622 aa  163  7e-39  Shewanella baltica OS155  Bacteria  normal  0.493821  n/a   
 
 
-
 
NC_008577  Shewana3_2254  methyl-accepting chemotaxis sensory transducer  34.64 
 
 
545 aa  163  7e-39  Shewanella sp. ANA-3  Bacteria  normal  normal  0.492 
 
 
-
 
NC_008345  Sfri_2212  methyl-accepting chemotaxis sensory transducer  37.74 
 
 
549 aa  163  7e-39  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3680  methyl-accepting chemotaxis protein  37.62 
 
 
676 aa  162  1e-38  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2220  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  33.23 
 
 
646 aa  162  1e-38  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.071358  normal  0.520396 
 
 
-
 
NC_007912  Sde_0391  methyl-accepting chemotaxis sensory transducer  32.66 
 
 
499 aa  163  1e-38  Saccharophagus degradans 2-40  Bacteria  normal  0.0811848  normal 
 
 
-
 
NC_008321  Shewmr4_0924  methyl-accepting chemotaxis sensory transducer  31.12 
 
 
543 aa  162  1e-38  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  36.01 
 
 
642 aa  161  2e-38  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  35.71 
 
 
642 aa  162  2e-38  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_009439  Pmen_1998  methyl-accepting chemotaxis sensory transducer  36.57 
 
 
714 aa  162  2e-38  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0164438 
 
 
-
 
NC_008321  Shewmr4_1767  methyl-accepting chemotaxis sensory transducer  34.31 
 
 
545 aa  162  2e-38  Shewanella sp. MR-4  Bacteria  normal  0.381763  normal 
 
 
-
 
NC_008322  Shewmr7_1845  methyl-accepting chemotaxis sensory transducer  33.44 
 
 
545 aa  162  2e-38  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  33.6 
 
 
713 aa  161  3e-38  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  37.85 
 
 
548 aa  161  3e-38  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_009654  Mmwyl1_2432  methyl-accepting chemotaxis sensory transducer  31.65 
 
 
555 aa  161  3e-38  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.0013651  normal  0.119091 
 
 
-
 
NC_008345  Sfri_0847  methyl-accepting chemotaxis sensory transducer  33.85 
 
 
620 aa  161  3e-38  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.566037  n/a   
 
 
-
 
NC_008577  Shewana3_0923  methyl-accepting chemotaxis sensory transducer  31.48 
 
 
543 aa  161  4e-38  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3455  methyl-accepting chemotaxis sensory transducer  31.59 
 
 
543 aa  161  4e-38  Shewanella baltica OS185  Bacteria  normal  0.0121993  n/a   
 
 
-
 
NC_011663  Sbal223_3382  methyl-accepting chemotaxis sensory transducer  32.8 
 
 
543 aa  160  4e-38  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  38.36 
 
 
634 aa  160  4e-38  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2301  methyl-accepting chemotaxis sensory transducer  32.61 
 
 
705 aa  161  4e-38  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4372  methyl-accepting chemotaxis protein  38.93 
 
 
619 aa  160  5e-38  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1439  methyl-accepting chemotaxis protein  32.95 
 
 
641 aa  160  6e-38  Colwellia psychrerythraea 34H  Bacteria  normal  0.336763  n/a   
 
 
-
 
NC_009997  Sbal195_3579  methyl-accepting chemotaxis sensory transducer  31.96 
 
 
543 aa  160  6e-38  Shewanella baltica OS195  Bacteria  normal  normal  0.0986947 
 
 
-
 
NC_009831  Ssed_3856  methyl-accepting chemotaxis sensory transducer  32.76 
 
 
640 aa  160  6e-38  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.825575 
 
 
-
 
NC_009052  Sbal_0908  methyl-accepting chemotaxis sensory transducer  31.59 
 
 
543 aa  160  6e-38  Shewanella baltica OS155  Bacteria  normal  0.073872  n/a   
 
 
-
 
NC_009052  Sbal_0870  methyl-accepting chemotaxis sensory transducer  34.06 
 
 
554 aa  160  7e-38  Shewanella baltica OS155  Bacteria  normal  0.0571565  n/a   
 
 
-
 
NC_004578  PSPTO_5159  methyl-accepting chemotaxis protein  37.69 
 
 
638 aa  160  7e-38  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  37.3 
 
 
681 aa  160  7e-38  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
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