| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3052 |
|---|
| Symbol | |
|---|
| ID | 1170738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 3164464 |
|---|
| End bp | 3166203 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637344857 |
|---|
| Product | methyl-accepting chemotaxis protein |
|---|
| Protein accession | NP_718617 |
|---|
| Protein GI | 24374574 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACAA AAACGATGAT GAGTGTTGTT TTTTCCACCA TAGTCGCCAG TGCGGTGATT
ACGGCGGTAC TCAGCTTTAA CGTCAAAAAT AAGGTTGAAC TCTTCAATGA TGCGGCCAAC
ATTCGCTACC ATTCTTATCA AATAGCCGAT GAATTGCGGC AAAGCTCCGA TGATTTGACC
AGACTCGCCC GCACCTATGC GGTGACTGGC GATGAAAAGT ACGAAAAAAT GTATATGGAT
ATTCTGGCGA TTCGTAACGG CGAAAAGCCA AGGCCGGAAA AGTACCATCA GATTTACTGG
GATCTCGTAC TGAATTACGG CGATAAGCCA CAACCAGACG GTGCCAGTGT CGCCATTAAA
AGCCAAATGC AAGCCTTAGG GTTTTCCGAT GAAGAATTCC GTTACCTTGA ACAGGCACAG
CAAAATTCTG ATGCCTTAGT CGCCCTAGAA GTTAAAGCAA TGAATGCGGT AAAAGGGATT
TTTATCGATC CTAATACGCA GACTTACAGT ATTAAAGGTG AGCCTAATCT GACGATGGCG
AGGGAATTAC TGCATAGTGA TGAATACCAT AGGGAAAAGG CAAAGATCAT GCAGCCGATC
GATCAGTTTT TTACCGCCTT GGATAAACGC ACCGATGCGC AGATGGATAA TCGATTGGAT
TCTTTACACA TGGCGCTAAA TAGCTCGCAG TTTGTACTGT TTTTAGTGAT TTTAGTTGCT
GTTGGCGGTT TTATGATTGT GAAGAGCAGG ATTGTGACTC CGCTGGTGCA GACCTGCAGC
GAGCTACTCG ATATTCAGAA ATCAAAAAAC CTTGCCCGCC GAATCTCAGT TTCCACCCAA
GGGGAAATTG GTGAAATCGT CAATCAAATC AACTTATTTA TTTCCTCATT AGCCAGTTCT
TTAGCGACAA CAGACGGTAT TGCTAAGGAG GTTGCTGATC TCGCCAAACA AACCAAGGCC
TCGATTCAAG TCTCCCGAGA AAGCTCTAAT CGAGTTGCCA AAGAGCTTGA TGCCAGTGCG
AGCGCGATGG AGGAAATGAC TACAACCTTA GTGCATGTAA GTGAAAGCAC CTCTAATGCT
GAAACCCGTG CGGCTGAAAA TGAAAACCAT GTGGGCGTTG GTCAGAATAC GGTTTCTGAG
GCACTTAATG CGATGGCAGT ACTTGAAAGT GAATTTACAA CCACCCAAGA TTCAATGCAG
CATTTAGTGA ATGAGAGCAC TCAAGTCAGT AATGTATTAA GTGTGATTAA AGCGATTGCC
GAGCAAACTA ACTTACTCGC GCTCAATGCG GCGATTGAAG CGGCAAGGGC GGGTGAGCAA
GGGCGTGGTT TTGCGGTGGT CGCGGATGAA GTCCGTTCAC TCGCGCAGCG CACTCAAGAT
TCCACCAAGG AAATCGACGA TATTGTTGCC AGCTTACAAA ATCGCACCAA TCAGGTGGGC
AGTTCAGTCA CTCAAGCGGC CAACTTGATG CAAAAAGCCT CGGTTGAATT ACAGCGGATA
GTGACGGTAT TTGATGATAT TCGCCAAAGT ACGGCTGCTA TCCATGGGAT CAATACCCAA
GTGGCCGCAT CAACGGAAGA GCAGTCGCTG GTGTCTAAGG AAATTGCGAC CAGTCTTATG
GTGATCCGTG ATAATTCCCG CGAAGTCTCA CAAATTATTG AGCAAATCGA ATCGACGTCC
ATCAGCTTAG ATAATCAATC TCAAGTACTG CGGACTAAAG CTGGGGAGTA TCAGTTTTAA
|
|---|
| Protein sequence | MNTKTMMSVV FSTIVASAVI TAVLSFNVKN KVELFNDAAN IRYHSYQIAD ELRQSSDDLT
RLARTYAVTG DEKYEKMYMD ILAIRNGEKP RPEKYHQIYW DLVLNYGDKP QPDGASVAIK
SQMQALGFSD EEFRYLEQAQ QNSDALVALE VKAMNAVKGI FIDPNTQTYS IKGEPNLTMA
RELLHSDEYH REKAKIMQPI DQFFTALDKR TDAQMDNRLD SLHMALNSSQ FVLFLVILVA
VGGFMIVKSR IVTPLVQTCS ELLDIQKSKN LARRISVSTQ GEIGEIVNQI NLFISSLASS
LATTDGIAKE VADLAKQTKA SIQVSRESSN RVAKELDASA SAMEEMTTTL VHVSESTSNA
ETRAAENENH VGVGQNTVSE ALNAMAVLES EFTTTQDSMQ HLVNESTQVS NVLSVIKAIA
EQTNLLALNA AIEAARAGEQ GRGFAVVADE VRSLAQRTQD STKEIDDIVA SLQNRTNQVG
SSVTQAANLM QKASVELQRI VTVFDDIRQS TAAIHGINTQ VAASTEEQSL VSKEIATSLM
VIRDNSREVS QIIEQIESTS ISLDNQSQVL RTKAGEYQF
|
|---|
| |