More than 300 homologs were found in PanDaTox collection
for query gene RSP_1612 on replicon NC_007493
Organism: Rhodobacter sphaeroides 2.4.1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009428  Rsph17025_0289  two component, sigma54 specific, Fis family transcriptional regulator  92.68 
 
 
439 aa  788    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1612  sigma-54 dependent transcriptional regulator  100 
 
 
439 aa  853    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0266  two component, sigma54 specific, Fis family transcriptional regulator  97.49 
 
 
439 aa  831    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4322  two component, sigma54 specific, Fis family transcriptional regulator  52.07 
 
 
444 aa  415  9.999999999999999e-116  Pseudomonas putida F1  Bacteria  normal  0.713581  normal 
 
 
-
 
NC_002947  PP_1401  two component, sigma54 specific, transcriptional regulator, Fis family  52.3 
 
 
444 aa  415  1e-114  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4410  two component, sigma54 specific, Fis family transcriptional regulator  51.84 
 
 
444 aa  409  1e-113  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4561  two component, sigma54 specific, Fis family transcriptional regulator  50.23 
 
 
446 aa  407  1.0000000000000001e-112  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1042  two component, sigma54 specific, Fis family transcriptional regulator  51.84 
 
 
444 aa  407  1.0000000000000001e-112  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4458  two component, sigma-54 specific, Fis family transcriptional regulator  50.81 
 
 
442 aa  398  9.999999999999999e-111  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.741172  normal 
 
 
-
 
NC_007005  Psyr_3995  helix-turn-helix, Fis-type  51.03 
 
 
444 aa  395  1e-109  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0385153 
 
 
-
 
NC_009656  PSPA7_6313  putative two-component response regulator  51.96 
 
 
447 aa  398  1e-109  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_008463  PA14_72720  putative two-component response regulator  51.03 
 
 
447 aa  397  1e-109  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.269979  normal 
 
 
-
 
NC_004578  PSPTO_4292  sigma-54 dependent transcriptional regulator/response regulator  49.89 
 
 
444 aa  392  1e-108  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3285  two component, sigma54 specific, transcriptional regulator, Fis family  50.81 
 
 
450 aa  389  1e-107  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1095  two component, sigma54 specific, Fis family transcriptional regulator  45.29 
 
 
442 aa  385  1e-106  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1066  two component, sigma54 specific, transcriptional regulator, Fis family  45.75 
 
 
442 aa  388  1e-106  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4346  two component, sigma54 specific, Fis family transcriptional regulator  45.52 
 
 
442 aa  387  1e-106  Pseudomonas putida GB-1  Bacteria  normal  0.788839  normal 
 
 
-
 
NC_012560  Avin_18020  sigma54-dependent response regulator of C4 dicarboxylate transport, two component; DctD  50.23 
 
 
446 aa  385  1e-106  Azotobacter vinelandii DJ  Bacteria  normal  0.266513  n/a   
 
 
-
 
NC_009512  Pput_1107  two component, sigma54 specific, Fis family transcriptional regulator  45.75 
 
 
442 aa  387  1e-106  Pseudomonas putida F1  Bacteria  normal  normal  0.248973 
 
 
-
 
NC_009720  Xaut_3936  two component, sigma54 specific, Fis family transcriptional regulator  49.1 
 
 
441 aa  383  1e-105  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3061  sigma-54 factor interaction domain-containing protein  50.81 
 
 
450 aa  384  1e-105  Methylobacterium extorquens PA1  Bacteria  normal  0.305462  normal 
 
 
-
 
NC_010725  Mpop_3260  two component, sigma54 specific, transcriptional regulator, Fis family  51.27 
 
 
450 aa  383  1e-105  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2669  two component, sigma54 specific, Fis family transcriptional regulator  47.7 
 
 
439 aa  382  1e-105  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_0194  two component, sigma54 specific, transcriptional regulator, Fis family  48.29 
 
 
438 aa  384  1e-105  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0392315 
 
 
-
 
NC_010725  Mpop_1208  two component, sigma54 specific, transcriptional regulator, Fis family  50 
 
 
458 aa  379  1e-104  Methylobacterium populi BJ001  Bacteria  normal  0.320827  normal  0.373488 
 
 
-
 
NC_003295  RSc0332  C4-dicarboxylate transport response regulator transcription regulator protein  47.84 
 
 
438 aa  381  1e-104  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1258  sigma-54 factor interaction domain-containing protein  49.77 
 
 
451 aa  379  1e-104  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.438925 
 
 
-
 
NC_007908  Rfer_3453  two component, sigma54 specific, Fis family transcriptional regulator  48.17 
 
 
445 aa  380  1e-104  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0188  two component, sigma54 specific, transcriptional regulator, Fis family  48.06 
 
 
438 aa  381  1e-104  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1419  two component, sigma54 specific, transcriptional regulator, Fis family  49.77 
 
 
451 aa  379  1e-104  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.895196 
 
 
-
 
NC_009668  Oant_3478  two component, sigma54 specific, Fis family transcriptional regulator  45.52 
 
 
450 aa  375  1e-103  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1516  C4-dicarboxylate transport transcriptional regulatory protein  44.95 
 
 
446 aa  376  1e-103  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2407  two component, sigma54 specific, Fis family transcriptional regulator  47.4 
 
 
461 aa  377  1e-103  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4176  sigma-54 dependent transcriptional regulator/response regulator  44.37 
 
 
442 aa  372  1e-102  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.999918  n/a   
 
 
-
 
NC_007492  Pfl01_4540  two component, sigma-54 specific, Fis family transcriptional regulator  43.91 
 
 
442 aa  372  1e-102  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.203781  normal  0.155775 
 
 
-
 
NC_010524  Lcho_2681  two component, sigma54 specific, Fis family transcriptional regulator  44.39 
 
 
444 aa  370  1e-101  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.818562 
 
 
-
 
NC_007005  Psyr_3913  helix-turn-helix, Fis-type  43.91 
 
 
442 aa  370  1e-101  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.289305  normal  0.253976 
 
 
-
 
NC_007347  Reut_A0275  helix-turn-helix, Fis-type  47.94 
 
 
441 aa  369  1e-101  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4770  two component, sigma54 specific, Fis family transcriptional regulator  50.23 
 
 
446 aa  371  1e-101  Methylobacterium sp. 4-46  Bacteria  normal  0.133057  normal  0.593625 
 
 
-
 
NC_008709  Ping_0712  C4-dicarboxylate transport sigma-54 regulatory protein  44.27 
 
 
446 aa  369  1e-101  Psychromonas ingrahamii 37  Bacteria  normal  0.212594  normal 
 
 
-
 
NC_010505  Mrad2831_0369  two component, sigma54 specific, Fis family transcriptional regulator  49.89 
 
 
451 aa  369  1e-101  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4293  two component, sigma54 specific, Fis family transcriptional regulator  46.26 
 
 
448 aa  366  1e-100  Delftia acidovorans SPH-1  Bacteria  normal  0.475037  normal 
 
 
-
 
NC_007643  Rru_A1435  two component, sigma54 specific, Fis family transcriptional regulator  47.14 
 
 
445 aa  367  1e-100  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0274365  n/a   
 
 
-
 
NC_009720  Xaut_4048  two component, sigma54 specific, Fis family transcriptional regulator  48.31 
 
 
459 aa  368  1e-100  Xanthobacter autotrophicus Py2  Bacteria  normal  0.650008  normal  0.353812 
 
 
-
 
NC_011988  Avi_6228  two component response regulator for C4-dicarboxylate transport  45.1 
 
 
458 aa  368  1e-100  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004047  C4-dicarboxylate transport transcriptional regulatory protein  45.23 
 
 
445 aa  365  1e-99  Vibrio sp. Ex25  Bacteria  normal  0.114732  n/a   
 
 
-
 
NC_009656  PSPA7_4050  putative two-component response regulator  44.27 
 
 
441 aa  364  2e-99  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0477  two component, sigma54 specific, Fis family transcriptional regulator  46.8 
 
 
443 aa  362  5.0000000000000005e-99  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0185  two component, sigma54 specific, Fis family transcriptional regulator  45.27 
 
 
446 aa  362  6e-99  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.297369  normal 
 
 
-
 
NC_009620  Smed_4176  two component, sigma54 specific, Fis family transcriptional regulator  46.44 
 
 
452 aa  362  8e-99  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.280959 
 
 
-
 
NC_010511  M446_1249  two component, sigma54 specific, Fis family transcriptional regulator  44.04 
 
 
452 aa  362  9e-99  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0227  two component, sigma54 specific, Fis family transcriptional regulator  45.23 
 
 
452 aa  361  1e-98  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0230  Fis family transcriptional regulator  46.56 
 
 
444 aa  361  1e-98  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4195  two component, sigma-54 specific, Fis family transcriptional regulator  45.1 
 
 
450 aa  361  2e-98  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.314648 
 
 
-
 
NC_010084  Bmul_0432  two component, sigma54 specific, Fis family transcriptional regulator  44.72 
 
 
450 aa  360  3e-98  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3169  two component, sigma54 specific, transcriptional regulator, Fis family  46.38 
 
 
444 aa  360  3e-98  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.254755  normal  0.187976 
 
 
-
 
NC_012850  Rleg_3460  two component, sigma54 specific, transcriptional regulator, Fis family  46.24 
 
 
444 aa  359  6e-98  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0376131  normal 
 
 
-
 
NC_007511  Bcep18194_B0306  two component, sigma54 specific, Fis family transcriptional regulator  43.99 
 
 
453 aa  358  9.999999999999999e-98  Burkholderia sp. 383  Bacteria  normal  0.794109  normal 
 
 
-
 
NC_012560  Avin_03680  C4 dicarboxylate two-component response regulator, sigma54-dependent; DctD2  47.17 
 
 
461 aa  357  1.9999999999999998e-97  Azotobacter vinelandii DJ  Bacteria  normal  0.0105245  n/a   
 
 
-
 
NC_009439  Pmen_4294  two component, sigma54 specific, Fis family transcriptional regulator  46.61 
 
 
461 aa  357  1.9999999999999998e-97  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.595978 
 
 
-
 
NC_008463  PA14_46990  putative two-component response regulator  46.02 
 
 
425 aa  356  3.9999999999999996e-97  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0103448  normal  0.161007 
 
 
-
 
NC_010678  Rpic_3789  two component, sigma54 specific, transcriptional regulator, Fis family  50.13 
 
 
452 aa  356  5e-97  Ralstonia pickettii 12J  Bacteria  normal  normal  0.146089 
 
 
-
 
NC_012857  Rpic12D_3902  two component, sigma54 specific, transcriptional regulator, Fis family  50.13 
 
 
452 aa  356  5e-97  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_68250  two-component response regulator  46.73 
 
 
462 aa  356  5e-97  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.371358  normal  0.144717 
 
 
-
 
NC_010681  Bphyt_0520  two component, sigma54 specific, transcriptional regulator, Fis family  44.19 
 
 
450 aa  356  5e-97  Burkholderia phytofirmans PsJN  Bacteria  normal  0.150741  normal 
 
 
-
 
NC_003296  RSp0009  response regulator of the C4-dicarboxylate transport two-component regulatory system transcription regulator protein  50.64 
 
 
454 aa  355  1e-96  Ralstonia solanacearum GMI1000  Bacteria  normal  0.313287  normal 
 
 
-
 
NC_010508  Bcenmc03_2882  two component, sigma54 specific, Fis family transcriptional regulator  44.47 
 
 
450 aa  355  1e-96  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.486122  normal 
 
 
-
 
NC_009656  PSPA7_5905  two-component response regulator  47.09 
 
 
462 aa  355  1e-96  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2257  two component, sigma54 specific, Fis family transcriptional regulator  44.47 
 
 
450 aa  354  2e-96  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2871  two component, sigma54 specific, Fis family transcriptional regulator  44.47 
 
 
450 aa  354  2e-96  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0598017  n/a   
 
 
-
 
NC_011369  Rleg2_2719  two component, sigma54 specific, transcriptional regulator, Fis family  45.14 
 
 
448 aa  353  4e-96  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2148  helix-turn-helix, Fis-type  46.47 
 
 
442 aa  352  7e-96  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.383237 
 
 
-
 
NC_007492  Pfl01_0287  two component, sigma-54 specific, Fis family transcriptional regulator  44.39 
 
 
462 aa  352  8e-96  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.378858 
 
 
-
 
NC_008390  Bamb_2926  two component, sigma54 specific, Fis family transcriptional regulator  44.04 
 
 
451 aa  352  8e-96  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2788  two component, sigma54 specific, Fis family transcriptional regulator  44.04 
 
 
451 aa  352  8e-96  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A6213  two component, sigma54 specific, Fis family transcriptional regulator  44.14 
 
 
451 aa  351  1e-95  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2504  two component, sigma54 specific, Fis family transcriptional regulator  42.73 
 
 
459 aa  351  1e-95  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_4338  two component, sigma54 specific, Fis family transcriptional regulator  44.37 
 
 
456 aa  350  3e-95  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011663  Sbal223_1548  two component, sigma54 specific, transcriptional regulator, Fis family  42.95 
 
 
459 aa  350  3e-95  Shewanella baltica OS223  Bacteria  normal  0.816634  normal 
 
 
-
 
NC_009997  Sbal195_2953  two component, sigma54 specific, Fis family transcriptional regulator  42.95 
 
 
459 aa  350  3e-95  Shewanella baltica OS195  Bacteria  normal  normal  0.0277282 
 
 
-
 
NC_007973  Rmet_0588  Fis family transcriptional regulator  44.62 
 
 
458 aa  350  3e-95  Cupriavidus metallidurans CH34  Bacteria  normal  0.651672  normal 
 
 
-
 
NC_008391  Bamb_4692  two component, sigma54 specific, Fis family transcriptional regulator  43.71 
 
 
453 aa  350  3e-95  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0995721 
 
 
-
 
NC_009052  Sbal_2810  two component, sigma54 specific, Fis family transcriptional regulator  42.95 
 
 
459 aa  350  3e-95  Shewanella baltica OS155  Bacteria  normal  0.776829  n/a   
 
 
-
 
NC_006348  BMA3226  C4-dicarboxylate transport transcriptional regulatory protein  43.69 
 
 
451 aa  350  4e-95  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0642  C4-dicarboxylate transport transcriptional regulatory protein  43.69 
 
 
451 aa  350  4e-95  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0478  C4-dicarboxylate transport transcriptional response regulator DctD  43.69 
 
 
451 aa  350  4e-95  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2818  C4-dicarboxylate transport transcriptional regulatory protein  43.69 
 
 
451 aa  350  4e-95  Burkholderia mallei NCTC 10247  Bacteria  normal  0.896177  n/a   
 
 
-
 
NC_009074  BURPS668_0458  C4-dicarboxylate transport transcriptional response regulator DctD  43.69 
 
 
451 aa  350  4e-95  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1392  C4-dicarboxylate transport transcriptional regulatory protein  43.69 
 
 
451 aa  350  4e-95  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0201  C4-dicarboxylate transport transcriptional regulatory protein  43.69 
 
 
451 aa  350  4e-95  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2213  response regulator receiver protein  43.47 
 
 
461 aa  349  5e-95  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2828  two component, sigma54 specific, Fis family transcriptional regulator  42.95 
 
 
459 aa  348  8e-95  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0401  C4-dicarboxylate transport transcriptional regulatory protein  43.47 
 
 
451 aa  348  1e-94  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1412  two component, sigma54 specific, Fis family transcriptional regulator  42.95 
 
 
459 aa  348  1e-94  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3138  C4-dicarboxylate transport transcriptional regulatory protein  42.95 
 
 
459 aa  348  2e-94  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_1424  two component, sigma54 specific, Fis family transcriptional regulator  42.73 
 
 
459 aa  347  2e-94  Shewanella sp. MR-7  Bacteria  normal  normal  0.545985 
 
 
-
 
NC_002947  PP_0263  two component, sigma54 specific, transcriptional regulator, Fis family  44.94 
 
 
468 aa  347  3e-94  Pseudomonas putida KT2440  Bacteria  normal  0.513605  normal  0.0177919 
 
 
-
 
NC_008321  Shewmr4_1359  two component, sigma54 specific, Fis family transcriptional regulator  42.73 
 
 
459 aa  347  3e-94  Shewanella sp. MR-4  Bacteria  normal  normal  0.0913399 
 
 
-
 
NC_009512  Pput_0278  two component, sigma54 specific, Fis family transcriptional regulator  44.94 
 
 
468 aa  346  4e-94  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4926  two component, sigma54 specific, Fis family transcriptional regulator  43.71 
 
 
453 aa  346  4e-94  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
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