More than 300 homologs were found in PanDaTox collection
for query gene Pden_4740 on replicon NC_008688
Organism: Paracoccus denitrificans PD1222



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008688  Pden_4740  two component LuxR family transcriptional regulator  100 
 
 		 160 aa  318  9.999999999999999e-87  Paracoccus denitrificans PD1222  Bacteria  normal  0.318753  normal  0.272493 
 
 
-
 
NC_009668  Oant_2873  two component LuxR family transcriptional regulator  45.51 
 
 		 216 aa  132  1.9999999999999998e-30  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_010682  Rpic_2943  two component transcriptional regulator, LuxR family  38.82 
 
 		 201 aa  99.4  2e-20  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012856  Rpic12D_2528  two component transcriptional regulator, LuxR family  38.82 
 
 		 201 aa  99  2e-20  Ralstonia pickettii 12D  Bacteria  normal  1  normal  0.0341229 
 
 
-
 
NC_010683  Rpic_4984  two component transcriptional regulator, LuxR family  38.82 
 
 		 201 aa  99  2e-20  Ralstonia pickettii 12J  Bacteria  normal  1  normal  0.0145131 
 
 
-
 
NC_010505  Mrad2831_4715  two component LuxR family transcriptional regulator  38.31 
 
 		 196 aa  99.4  2e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010682  Rpic_1673  two component transcriptional regulator, LuxR family  38.82 
 
 		 201 aa  99.4  2e-20  Ralstonia pickettii 12J  Bacteria  normal  0.619826  normal  1 
 
 
-
 
NC_007974  Rmet_5323  transcriptional regulator two component heavy metal regulatory response ZniR  39.47 
 
 		 206 aa  99.4  2e-20  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.844748 
 
 
-
 
NC_009485  BBta_1549  LuxR transcriptional regulator  37.58 
 
 		 201 aa  87  1e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.355184  normal  0.152747 
 
 
-
 
NC_011884  Cyan7425_5215  two component transcriptional regulator, LuxR family  30.97 
 
 		 217 aa  80.1  0.00000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_0301  two component LuxR family transcriptional regulator  29.67 
 
 		 231 aa  80.1  0.00000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.54347  normal  1 
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  28.57 
 
 		 216 aa  78.6  0.00000000000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  28.57 
 
 		 216 aa  78.6  0.00000000000003  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011726  PCC8801_1812  two component transcriptional regulator, LuxR family  28.49 
 
 		 231 aa  78.2  0.00000000000004  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_2881  two component transcriptional regulator, LuxR family  28.85 
 
 		 212 aa  78.2  0.00000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_013161  Cyan8802_1838  two component transcriptional regulator, LuxR family  28.49 
 
 		 231 aa  78.2  0.00000000000004  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014248  Aazo_2987  LuxR family two component transcriptional regulator  28.57 
 
 		 231 aa  77.4  0.00000000000008  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_014248  Aazo_2887  LuxR family two component transcriptional regulator  28.83 
 
 		 225 aa  76.6  0.0000000000001  'Nostoc azollae' 0708  Bacteria  normal  0.526109  n/a   
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  28.83 
 
 		 225 aa  76.6  0.0000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_010571  Oter_0804  two component LuxR family transcriptional regulator  32.47 
 
 		 204 aa  75.1  0.0000000000003  Opitutus terrae PB90-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008312  Tery_4323  two component LuxR family transcriptional regulator  30.32 
 
 		 215 aa  74.3  0.0000000000007  Trichodesmium erythraeum IMS101  Bacteria  normal  0.115662  normal  0.727411 
 
 
-
 
NC_011729  PCC7424_2955  two component transcriptional regulator, LuxR family  27.53 
 
 		 231 aa  73.6  0.000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.800941 
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  28.26 
 
 		 235 aa  73.6  0.000000000001  Synechococcus elongatus PCC 7942  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  28.57 
 
 		 222 aa  72.8  0.000000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_011831  Cagg_3359  two component transcriptional regulator, LuxR family  33.33 
 
 		 219 aa  72.4  0.000000000003  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00321115  hitchhiker  0.000132937 
 
 
-
 
NC_008781  Pnap_3628  two component LuxR family transcriptional regulator  34.32 
 
 		 292 aa  72  0.000000000003  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.350857 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  34.81 
 
 		 207 aa  71.6  0.000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  33.33 
 
 		 235 aa  71.6  0.000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_013161  Cyan8802_3680  two component transcriptional regulator, LuxR family  30.18 
 
 		 223 aa  70.9  0.000000000007  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  0.233635 
 
 
-
 
NC_011726  PCC8801_2430  two component transcriptional regulator, LuxR family  30.18 
 
 		 223 aa  70.9  0.000000000007  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009972  Haur_4039  two component LuxR family transcriptional regulator  30.06 
 
 		 250 aa  69.3  0.00000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.512873  n/a   
 
 
-
 
NC_007516  Syncc9605_2427  two component LuxR family transcriptional regulator  29.71 
 
 		 245 aa  69.3  0.00000000002  Synechococcus sp. CC9605  Bacteria  normal  0.27075  normal  1 
 
 
-
 
NC_013037  Dfer_1698  two component transcriptional regulator, LuxR family  32.7 
 
 		 207 aa  68.9  0.00000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.126193 
 
 
-
 
NC_013510  Tcur_1651  two component transcriptional regulator, LuxR family  36.09 
 
 		 218 aa  68.6  0.00000000003  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000163278  n/a   
 
 
-
 
NC_011675  PHATRDRAFT_45539  diatom response regulator 1  29.55 
 
 		 319 aa  68.6  0.00000000004  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  1  n/a   
 
 
-
 
NC_008687  Pden_3311  response regulator receiver protein  43.04 
 
 		 321 aa  68.6  0.00000000004  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.479786 
 
 
-
 
NC_008146  Mmcs_1056  two component LuxR family transcriptional regulator  30.18 
 
 		 219 aa  67.8  0.00000000005  Mycobacterium sp. MCS  Bacteria  normal  1  n/a   
 
 
-
 
NC_009077  Mjls_1083  two component LuxR family transcriptional regulator  30.18 
 
 		 219 aa  67.8  0.00000000005  Mycobacterium sp. JLS  Bacteria  normal  0.605869  normal  1 
 
 
-
 
NC_008705  Mkms_1072  two component LuxR family transcriptional regulator  30.18 
 
 		 219 aa  67.8  0.00000000005  Mycobacterium sp. KMS  Bacteria  normal  0.562029  normal  0.0679961 
 
 
-
 
NC_011729  PCC7424_0031  two component transcriptional regulator, LuxR family  28.57 
 
 		 229 aa  67.4  0.00000000007  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_009720  Xaut_1075  two component transcriptional regulator  38.52 
 
 		 220 aa  67.4  0.00000000008  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007513  Syncc9902_2107  two component LuxR family transcriptional regulator  28.57 
 
 		 245 aa  67  0.0000000001  Synechococcus sp. CC9902  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_0481  response regulator receiver protein  48.1 
 
 		 523 aa  67  0.0000000001  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011891  A2cp1_2938  two component transcriptional regulator, LuxR family  32.32 
 
 		 215 aa  66.2  0.0000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011884  Cyan7425_4627  two component transcriptional regulator, LuxR family  27.53 
 
 		 226 aa  66.2  0.0000000002  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011145  AnaeK_2846  two component transcriptional regulator, LuxR family  32.32 
 
 		 215 aa  66.2  0.0000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.243379  n/a   
 
 
-
 
NC_007760  Adeh_2754  two component LuxR family transcriptional regulator  32.32 
 
 		 215 aa  66.2  0.0000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.221671  n/a   
 
 
-
 
NC_011369  Rleg2_2336  response regulator receiver protein  47.83 
 
 		 133 aa  66.2  0.0000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.103968  normal  0.760096 
 
 
-
 
NC_007974  Rmet_5165  two component LuxR family transcriptional regulator  32.94 
 
 		 231 aa  66.2  0.0000000002  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.162111 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  31.61 
 
 		 221 aa  66.2  0.0000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008816  A9601_01871  two-component response regulator  28.49 
 
 		 242 aa  66.2  0.0000000002  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.528311  n/a   
 
 
-
 
NC_008700  Sama_2699  response regulator receiver protein  50 
 
 		 233 aa  65.5  0.0000000003  Shewanella amazonensis SB2B  Bacteria  normal  0.824129  normal  1 
 
 
-
 
NC_009976  P9211_01871  two-component response regulator  28.19 
 
 		 242 aa  65.1  0.0000000004  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009675  Anae109_2743  two component LuxR family transcriptional regulator  32.32 
 
 		 215 aa  65.1  0.0000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.231043  normal  1 
 
 
-
 
NC_008321  Shewmr4_0483  response regulator receiver sensor signal transduction histidine kinase  46.84 
 
 		 524 aa  65.1  0.0000000004  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008322  Shewmr7_3547  response regulator receiver sensor signal transduction histidine kinase  46.84 
 
 		 524 aa  65.1  0.0000000004  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007577  PMT9312_0171  two component LuxR family transcriptional regulator  28.26 
 
 		 242 aa  64.7  0.0000000005  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  1  n/a   
 
 
-
 
NC_013422  Hneap_1804  two component transcriptional regulator, LuxR family  31.29 
 
 		 212 aa  64.7  0.0000000005  Halothiobacillus neapolitanus c2  Bacteria  normal  0.023063  n/a   
 
 
-
 
NC_010627  Bphy_7764  two component LuxR family transcriptional regulator  33.75 
 
 		 210 aa  64.3  0.0000000007  Burkholderia phymatum STM815  Bacteria  normal  0.527093  normal  1 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  33.72 
 
 		 220 aa  64.3  0.0000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_009091  P9301_01891  two-component response regulator  28.49 
 
 		 242 aa  63.9  0.0000000008  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.991625  n/a   
 
 
-
 
NC_012850  Rleg_2665  response regulator receiver protein  46.38 
 
 		 133 aa  63.9  0.0000000009  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0531061  normal  1 
 
 
-
 
NC_012669  Bcav_3541  two component transcriptional regulator, LuxR family  35.62 
 
 		 211 aa  63.9  0.0000000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.485125  normal  0.513005 
 
 
-
 
NC_013947  Snas_4871  two component transcriptional regulator, LuxR family  32.92 
 
 		 222 aa  63.9  0.000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.134443  normal  0.31614 
 
 
-
 
NC_009953  Sare_3511  two component LuxR family transcriptional regulator  33.54 
 
 		 221 aa  63.5  0.000000001  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  0.0444635 
 
 
-
 
NC_009380  Strop_3279  response regulator receiver  33.54 
 
 		 221 aa  63.5  0.000000001  Salinispora tropica CNB-440  Bacteria  normal  0.97215  normal  1 
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  32.47 
 
 		 211 aa  63.5  0.000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_007778  RPB_0181  two component LuxR family transcriptional regulator  33.99 
 
 		 210 aa  63.5  0.000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007908  Rfer_2262  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  30.94 
 
 		 853 aa  63.5  0.000000001  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_009621  Smed_5633  response regulator receiver protein  31.82 
 
 		 218 aa  63.5  0.000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.938686  normal  0.508699 
 
 
-
 
NC_010086  Bmul_3683  two component LuxR family transcriptional regulator  33.54 
 
 		 205 aa  63.2  0.000000001  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.00690698  normal  0.306381 
 
 
-
 
NC_008819  NATL1_02441  two-component response regulator  30.11 
 
 		 242 aa  63.5  0.000000001  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.72299  normal  1 
 
 
-
 
NC_011725  BCB4264_A3228  Two-component protein Kinase  29.71 
 
 		 595 aa  62.4  0.000000002  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_011884  Cyan7425_0981  two component transcriptional regulator, LuxR family  26.25 
 
 		 221 aa  63.2  0.000000002  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  0.416641 
 
 
-
 
NC_010184  BcerKBAB4_2996  two component LuxR family transcriptional regulator  29.71 
 
 		 595 aa  62.8  0.000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.896317  n/a   
 
 
-
 
NC_007335  PMN2A_1537  two component LuxR family transcriptional regulator  27.32 
 
 		 242 aa  62.8  0.000000002  Prochlorococcus marinus str. NATL2A  Bacteria  normal  1  n/a   
 
 
-
 
NC_007406  Nwi_2518  two-component transcriptional regulator  31.41 
 
 		 246 aa  62.8  0.000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  0.18728 
 
 
-
 
NC_013131  Caci_5428  two component transcriptional regulator, LuxR family  33.54 
 
 		 201 aa  62.4  0.000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.358603 
 
 
-
 
NC_007492  Pfl01_0640  two component LuxR family transcriptional regulator  28.36 
 
 		 269 aa  62.8  0.000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  33.09 
 
 		 221 aa  62.8  0.000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.133182 
 
 
-
 
NC_013131  Caci_5202  two component transcriptional regulator, LuxR family  31.52 
 
 		 225 aa  62.4  0.000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.677169  normal  0.920773 
 
 
-
 
NC_011772  BCG9842_B2026  Two-component protein Kinase  29.71 
 
 		 595 aa  62.8  0.000000002  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_1737  two component transcriptional regulator  30.63 
 
 		 243 aa  62.8  0.000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.151372  normal  0.336316 
 
 
-
 
NC_009092  Shew_0842  two component LuxR family transcriptional regulator  31.41 
 
 		 209 aa  62.8  0.000000002  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00000336278  normal  1 
 
 
-
 
NC_008817  P9515_01981  two-component response regulator  27.84 
 
 		 242 aa  63.2  0.000000002  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.125891  n/a   
 
 
-
 
NC_008781  Pnap_1851  two component LuxR family transcriptional regulator  32.14 
 
 		 262 aa  62.8  0.000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.467917  normal  0.53175 
 
 
-
 
NC_009997  Sbal195_1319  two component LuxR family transcriptional regulator  29.63 
 
 		 216 aa  62  0.000000003  Shewanella baltica OS195  Bacteria  normal  0.0542522  decreased coverage  0.000972679 
 
 
-
 
NC_009972  Haur_1474  response regulator receiver modulated metal dependent phosphohydrolase  51.67 
 
 		 345 aa  62  0.000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_1771  PAS:GGDEF  42.67 
 
 		 449 aa  62  0.000000003  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009338  Mflv_5014  two component LuxR family transcriptional regulator  27.67 
 
 		 209 aa  62  0.000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.103708  normal  0.29037 
 
 
-
 
NC_007954  Sden_3055  response regulator receiver  31.25 
 
 		 219 aa  62.4  0.000000003  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_010676  Bphyt_6235  two component transcriptional regulator, LuxR family  32.3 
 
 		 210 aa  62  0.000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.612124 
 
 
-
 
NC_011146  Gbem_2407  response regulator receiver modulated metal dependent phosphohydrolase  40.85 
 
 		 347 aa  61.6  0.000000004  Geobacter bemidjiensis Bem  Bacteria  normal  0.21688  n/a   
 
 
-
 
NC_009485  BBta_7459  nodulation protein W, two-component transcriptional regulator  32.47 
 
 		 219 aa  62  0.000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  28.99 
 
 		 221 aa  61.6  0.000000004  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.0179337 
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  31.64 
 
 		 221 aa  61.6  0.000000004  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007604  Synpcc7942_1815  response regulator receiver domain-containing protein  45 
 
 		 411 aa  61.6  0.000000004  Synechococcus elongatus PCC 7942  Bacteria  normal  0.800608  normal  0.49797 
 
 
-
 
NC_011146  Gbem_0799  response regulator receiver protein  37.62 
 
 		 225 aa  62  0.000000004  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_1811  response regulator receiver modulated metal dependent phosphohydrolase  40.85 
 
 		 347 aa  61.6  0.000000004  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00843757 
 
 
-
 
NC_009720  Xaut_3389  response regulator receiver protein  33.54 
 
 		 211 aa  62  0.000000004  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
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