More than 300 homologs were found in PanDaTox collection
for query gene Bamb_4169 on replicon NC_008391
Organism: Burkholderia ambifaria AMMD



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008391  Bamb_4169  short-chain dehydrogenase/reductase SDR  100 
 
 
263 aa  512  1e-144  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0928  Short-chain dehydrogenase/reductase SDR  95.82 
 
 
263 aa  491  9.999999999999999e-139  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4691  short-chain dehydrogenase/reductase SDR  97.34 
 
 
263 aa  477  1e-134  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5499  short-chain dehydrogenase/reductase SDR  92.4 
 
 
263 aa  452  1.0000000000000001e-126  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.526746 
 
 
-
 
NC_008061  Bcen_3583  short-chain dehydrogenase/reductase SDR  92.4 
 
 
263 aa  452  1.0000000000000001e-126  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4784  short-chain dehydrogenase/reductase SDR  92.4 
 
 
263 aa  452  1.0000000000000001e-126  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0533627  normal 
 
 
-
 
NC_010086  Bmul_3816  short-chain dehydrogenase/reductase SDR  88.51 
 
 
263 aa  448  1e-125  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.000362562 
 
 
-
 
NC_009832  Spro_0621  short-chain dehydrogenase/reductase SDR  62.86 
 
 
260 aa  301  8.000000000000001e-81  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0053  short chain dehydrogenase/reductase family oxidoreductase  57.44 
 
 
265 aa  238  1e-61  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2718  short chain dehydrogenase/reductase family oxidoreductase  57.44 
 
 
265 aa  236  2e-61  Burkholderia mallei NCTC 10247  Bacteria  normal  0.987869  n/a   
 
 
-
 
NC_006348  BMA2660  short chain dehydrogenase/reductase family oxidoreductase  57.44 
 
 
265 aa  236  2e-61  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1834  short chain dehydrogenase/reductase family oxidoreductase  57.44 
 
 
265 aa  236  2e-61  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0276  short chain dehydrogenase/reductase family oxidoreductase  57.85 
 
 
265 aa  237  2e-61  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3293  short chain dehydrogenase/reductase family oxidoreductase  57.44 
 
 
265 aa  236  2e-61  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0060  short chain dehydrogenase/reductase family oxidoreductase  57.85 
 
 
265 aa  237  2e-61  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0061  short chain dehydrogenase/reductase family oxidoreductase  57.85 
 
 
265 aa  237  2e-61  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_4447  short-chain dehydrogenase/reductase SDR  49.17 
 
 
262 aa  209  3e-53  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.052373 
 
 
-
 
NC_009511  Swit_4351  short-chain dehydrogenase/reductase SDR  40.59 
 
 
268 aa  169  4e-41  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.48902 
 
 
-
 
NC_007005  Psyr_0904  Short-chain dehydrogenase/reductase SDR  38.1 
 
 
254 aa  159  4e-38  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1056  oxidoreductase, short chain dehydrogenase/reductase family  37.3 
 
 
254 aa  157  2e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1326  short-chain dehydrogenase/reductase SDR  39.29 
 
 
254 aa  149  5e-35  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.393683 
 
 
-
 
NC_011757  Mchl_1526  short-chain dehydrogenase/reductase SDR  39.68 
 
 
254 aa  145  6e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1323  short-chain dehydrogenase/reductase SDR  38.74 
 
 
254 aa  143  3e-33  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2063  short-chain dehydrogenase/reductase SDR  35.46 
 
 
251 aa  142  6e-33  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2411  3-hydroxybutyrate dehydrogenase  34.66 
 
 
260 aa  139  3e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  0.520745  normal  0.812558 
 
 
-
 
NC_008541  Arth_1790  short-chain dehydrogenase/reductase SDR  36.47 
 
 
255 aa  139  3e-32  Arthrobacter sp. FB24  Bacteria  normal  0.0755029  n/a   
 
 
-
 
NC_008697  Noca_4841  short-chain dehydrogenase/reductase SDR  37.65 
 
 
258 aa  138  7.999999999999999e-32  Nocardioides sp. JS614  Bacteria  normal  0.166683  normal 
 
 
-
 
NC_010557  BamMC406_5564  3-hydroxybutyrate dehydrogenase  35.06 
 
 
260 aa  137  2e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4471  short-chain dehydrogenase/reductase SDR  37.01 
 
 
270 aa  135  6.0000000000000005e-31  Delftia acidovorans SPH-1  Bacteria  normal  0.0156103  normal  0.420839 
 
 
-
 
NC_013946  Mrub_1897  short-chain dehydrogenase/reductase SDR  35.77 
 
 
247 aa  135  7.000000000000001e-31  Meiothermus ruber DSM 1279  Bacteria  normal  hitchhiker  0.00100219 
 
 
-
 
NC_010681  Bphyt_1098  short-chain dehydrogenase/reductase SDR  36.36 
 
 
249 aa  135  7.000000000000001e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1220  short chain dehydrogenase  40 
 
 
254 aa  134  1.9999999999999998e-30  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0140677 
 
 
-
 
NC_007778  RPB_2264  Short-chain dehydrogenase/reductase SDR  36.25 
 
 
255 aa  134  1.9999999999999998e-30  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.136651  normal 
 
 
-
 
NC_009621  Smed_5843  short-chain dehydrogenase/reductase SDR  36.19 
 
 
261 aa  134  1.9999999999999998e-30  Sinorhizobium medicae WSM419  Bacteria  normal  0.861263  normal 
 
 
-
 
NC_007794  Saro_0512  short-chain dehydrogenase/reductase SDR  35.22 
 
 
248 aa  133  3e-30  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3206  short-chain dehydrogenase/reductase SDR  35.86 
 
 
255 aa  133  3e-30  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2971  short-chain dehydrogenase/reductase SDR  36.11 
 
 
254 aa  132  3.9999999999999996e-30  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0620  3-oxoacyl-[acyl-carrier-protein] reductase  37.3 
 
 
250 aa  133  3.9999999999999996e-30  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.890979 
 
 
-
 
NC_009719  Plav_1752  short chain dehydrogenase  40.24 
 
 
254 aa  132  6e-30  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2784  short chain dehydrogenase/reductase family oxidoreductase  36.51 
 
 
254 aa  132  6.999999999999999e-30  Pseudomonas putida KT2440  Bacteria  normal  0.330689  normal 
 
 
-
 
NC_009524  PsycPRwf_0909  short-chain dehydrogenase/reductase SDR  33.33 
 
 
244 aa  132  6.999999999999999e-30  Psychrobacter sp. PRwf-1  Bacteria  normal  0.271894  normal 
 
 
-
 
NC_009656  PSPA7_3469  putative short-chain dehydrogenase  37.35 
 
 
252 aa  132  6.999999999999999e-30  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1096  glucose dehydrogenase  37.5 
 
 
244 aa  130  2.0000000000000002e-29  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0163868 
 
 
-
 
NC_009901  Spea_2131  short-chain dehydrogenase/reductase SDR  34.15 
 
 
262 aa  130  2.0000000000000002e-29  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008697  Noca_4814  short-chain dehydrogenase/reductase SDR  38.43 
 
 
257 aa  130  2.0000000000000002e-29  Nocardioides sp. JS614  Bacteria  normal  0.19857  normal 
 
 
-
 
NC_008752  Aave_1551  short-chain dehydrogenase/reductase SDR  36.03 
 
 
270 aa  130  3e-29  Acidovorax citrulli AAC00-1  Bacteria  normal  0.2513  normal  0.363007 
 
 
-
 
NC_013947  Snas_6457  short-chain dehydrogenase/reductase SDR  37.45 
 
 
252 aa  129  3e-29  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.805943 
 
 
-
 
NC_012669  Bcav_2700  short-chain dehydrogenase/reductase SDR  41 
 
 
268 aa  129  3e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.657901 
 
 
-
 
NC_008688  Pden_4584  short chain dehydrogenase  38.52 
 
 
252 aa  129  4.0000000000000003e-29  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.170316 
 
 
-
 
NC_011369  Rleg2_0435  short-chain dehydrogenase/reductase SDR  37.5 
 
 
251 aa  129  5.0000000000000004e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0923902  normal 
 
 
-
 
NC_008726  Mvan_1861  short-chain dehydrogenase/reductase SDR  36 
 
 
268 aa  129  5.0000000000000004e-29  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.651686  normal  0.848972 
 
 
-
 
NC_009338  Mflv_4505  short-chain dehydrogenase/reductase SDR  36.07 
 
 
260 aa  129  6e-29  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3478  short-chain dehydrogenase/reductase SDR  34.66 
 
 
255 aa  129  7.000000000000001e-29  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4205  short chain dehydrogenase  33.86 
 
 
249 aa  128  7.000000000000001e-29  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0643  short-chain dehydrogenase/reductase SDR  33.33 
 
 
271 aa  129  7.000000000000001e-29  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.224446 
 
 
-
 
NC_010505  Mrad2831_1822  short-chain dehydrogenase/reductase SDR  38.34 
 
 
256 aa  129  7.000000000000001e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.675058  normal  0.0165705 
 
 
-
 
NC_009441  Fjoh_4007  short-chain dehydrogenase/reductase SDR  28.97 
 
 
247 aa  128  8.000000000000001e-29  Flavobacterium johnsoniae UW101  Bacteria  normal  0.466284  n/a   
 
 
-
 
NC_007963  Csal_1022  short chain dehydrogenase  37.15 
 
 
261 aa  128  8.000000000000001e-29  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.917277  n/a   
 
 
-
 
NC_009954  Cmaq_1409  aldose dehydrogenase  34.29 
 
 
258 aa  128  1.0000000000000001e-28  Caldivirga maquilingensis IC-167  Archaea  normal  normal 
 
 
-
 
NC_008228  Patl_1832  short-chain dehydrogenase/reductase SDR  32.93 
 
 
250 aa  128  1.0000000000000001e-28  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000715788  n/a   
 
 
-
 
NC_008254  Meso_2493  short-chain dehydrogenase/reductase SDR  35.25 
 
 
253 aa  127  1.0000000000000001e-28  Chelativorans sp. BNC1  Bacteria  normal  0.0816082  n/a   
 
 
-
 
NC_013730  Slin_6198  short-chain dehydrogenase/reductase SDR  34.3 
 
 
260 aa  127  2.0000000000000002e-28  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0030  3-oxoacyl-(acyl-carrier-protein) reductase, putative  36.55 
 
 
245 aa  127  2.0000000000000002e-28  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A2811  short chain dehydrogenase  34.51 
 
 
263 aa  127  2.0000000000000002e-28  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0047  short-chain dehydrogenase/reductase SDR  38.19 
 
 
248 aa  127  2.0000000000000002e-28  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II1604  short chain dehydrogenase/reductase family oxidoreductase  36 
 
 
247 aa  127  2.0000000000000002e-28  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2681  short chain dehydrogenase  34.51 
 
 
263 aa  127  2.0000000000000002e-28  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2639  short chain dehydrogenase  34.51 
 
 
263 aa  127  2.0000000000000002e-28  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2590  short chain dehydrogenase  34.51 
 
 
263 aa  127  2.0000000000000002e-28  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2705  short chain dehydrogenase  34.51 
 
 
263 aa  127  2.0000000000000002e-28  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.856225  normal 
 
 
-
 
NC_009485  BBta_5100  putative short-chain dehydrogenase/reductase SDR family protein  34.9 
 
 
261 aa  127  2.0000000000000002e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.917841  normal  0.678944 
 
 
-
 
NC_009504  BOV_A0027  putative 3-oxoacyl-(acyl-carrier-protein) reductase  36.55 
 
 
245 aa  127  2.0000000000000002e-28  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3705  short-chain dehydrogenase/reductase SDR  35.46 
 
 
255 aa  127  2.0000000000000002e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.551214  n/a   
 
 
-
 
NC_010625  Bphy_6809  short-chain dehydrogenase/reductase SDR  33.46 
 
 
254 aa  126  3e-28  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0104  short-chain dehydrogenase/reductase SDR  35.22 
 
 
246 aa  126  3e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.650868  normal 
 
 
-
 
NC_012852  Rleg_6202  3-hydroxybutyrate dehydrogenase  33.2 
 
 
260 aa  126  3e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.554491 
 
 
-
 
NC_011984  Avi_9206  3-oxoacyl-(acyl-carrier protein) reductase  35.69 
 
 
246 aa  126  3e-28  Agrobacterium vitis S4  Bacteria  normal  0.341088  n/a   
 
 
-
 
NC_008148  Rxyl_2275  short-chain dehydrogenase/reductase SDR  35.77 
 
 
254 aa  127  3e-28  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0823  short chain dehydrogenase/reductase family oxidoreductase  36.51 
 
 
247 aa  126  4.0000000000000003e-28  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0642  short chain dehydrogenase/reductase family oxidoreductase  36.51 
 
 
247 aa  126  4.0000000000000003e-28  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007488  RSP_4004  Short-chain dehydrogenase/reductase SDR  37.85 
 
 
259 aa  126  4.0000000000000003e-28  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.132038  n/a   
 
 
-
 
NC_007492  Pfl01_2439  Short-chain dehydrogenase/reductase SDR  35.68 
 
 
249 aa  126  4.0000000000000003e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.427983  normal  0.121811 
 
 
-
 
NC_009079  BMA10247_A1785  short chain dehydrogenase/reductase family oxidoreductase  36.51 
 
 
247 aa  126  4.0000000000000003e-28  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1378  short-chain dehydrogenase/reductase SDR  38.28 
 
 
251 aa  125  5e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.179495  normal  0.922727 
 
 
-
 
NC_007511  Bcep18194_B1464  Short-chain dehydrogenase/reductase SDR  36.65 
 
 
262 aa  125  5e-28  Burkholderia sp. 383  Bacteria  normal  0.305305  normal  0.474897 
 
 
-
 
NC_010498  EcSMS35_2581  short chain dehydrogenase  34.65 
 
 
263 aa  125  5e-28  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_3656  short chain dehydrogenase  34.77 
 
 
263 aa  125  5e-28  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0321  short-chain dehydrogenase/reductase SDR  36.61 
 
 
254 aa  126  5e-28  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4152  short-chain dehydrogenase/reductase SDR  36.51 
 
 
257 aa  125  5e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1543  3-hydroxybutyrate dehydrogenase  34.26 
 
 
260 aa  125  6e-28  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5938  3-ketoacyl-(acyl-carrier-protein) reductase  36.48 
 
 
234 aa  125  6e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  0.355908  decreased coverage  0.00196456 
 
 
-
 
NC_009511  Swit_3324  short-chain dehydrogenase/reductase SDR  37.84 
 
 
248 aa  125  6e-28  Sphingomonas wittichii RW1  Bacteria  normal  0.057049  hitchhiker  0.000702749 
 
 
-
 
NC_011369  Rleg2_2039  short chain dehydrogenase  36.29 
 
 
255 aa  125  6e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0111409  normal 
 
 
-
 
NC_008697  Noca_4826  short-chain dehydrogenase/reductase SDR  38.37 
 
 
244 aa  125  6e-28  Nocardioides sp. JS614  Bacteria  normal  normal  0.806753 
 
 
-
 
NC_010511  M446_6244  short-chain dehydrogenase/reductase SDR  38.55 
 
 
252 aa  125  7e-28  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.240811 
 
 
-
 
CP001800  Ssol_2412  short-chain dehydrogenase/reductase SDR  32.39 
 
 
248 aa  125  8.000000000000001e-28  Sulfolobus solfataricus 98/2  Archaea  normal  0.253805  n/a   
 
 
-
 
NC_007413  Ava_0311  Short-chain dehydrogenase/reductase SDR  33.88 
 
 
262 aa  125  8.000000000000001e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1941  3-oxoacyl-(acyl-carrier-protein) reductase  34.02 
 
 
234 aa  125  8.000000000000001e-28  Thermobispora bispora DSM 43833  Bacteria  normal  0.0923131  normal  0.859754 
 
 
-
 
CP001637  EcDH1_1235  short-chain dehydrogenase/reductase SDR  34.65 
 
 
263 aa  125  9e-28  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3770  3-hydroxybutyrate dehydrogenase  34.31 
 
 
252 aa  125  9e-28  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
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