| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3478 |
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| Symbol | |
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| ID | 3971764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3863740 |
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| End bp | 3864507 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637926590 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_533337 |
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| Protein GI | 90424967 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTGT TCGATCTGTC GGGAAAAGTC GCGGTGATCA CCGGCTCGTC GCGCGGCATC
GGCCGCGCCA TCGCCGAGCG GATGGCCGAG CACGGCGCCA ATGTGGTGAT CTCGTCGCGC
AAGCAGCAGG CCTGCGACGA GGTCGCGCAC GCCATCAACG AGAAGATCGG CAGCCGCGTC
GCGCTGCCGG TCGCCGCCAA CATCTCGACC AAGGACGACC TCAAGAACCT GGTCGAGGAG
ACCAACCGGG TGTTCGGTCC GATCGACACG CTGGTGTGCA ACGCCGCGTC GAATCCGTAT
TACGGGCCGC AGGCGGAGAT TTCCGACGAT CAGTTCCGCA AGATCCTCGA CAACAACATC
GTCGCCAATC ACTGGCTGAT CAGCCTGGTG GCGCCGCAGA TGATCGAGCG CCGCGACGGC
TCGATCACCA TCGTGTCGTC GATCGGCGGG CTGAAGGGCT CCACCGTGAT CGGCGCCTAT
TGCATTTCCA AGGCCGCCGA CATGCAGCTC GCCCGCAACC TCGCCTGCGA ATACGGTCCG
CATAATGTCC GCGTCAACTG CATTGCGCCT GGACTGATCA AGACCGATTT CGCCAAGGCG
CTGTGGGACA ATCCGGAGAC GCTGAAGGCC TCCACCGCGC GCTCGCCGCT ATTGCGGATC
GGCGAGCCCG ACGAGATCGC CGGCGCCGCG GTGTTCCTGG CCTCCGCCGC CGGCACCTTC
ATGACCGGTC AGACCATGGT GATCGACGGC GGCGCGACGA TTAGTTAG
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| Protein sequence | MSLFDLSGKV AVITGSSRGI GRAIAERMAE HGANVVISSR KQQACDEVAH AINEKIGSRV
ALPVAANIST KDDLKNLVEE TNRVFGPIDT LVCNAASNPY YGPQAEISDD QFRKILDNNI
VANHWLISLV APQMIERRDG SITIVSSIGG LKGSTVIGAY CISKAADMQL ARNLACEYGP
HNVRVNCIAP GLIKTDFAKA LWDNPETLKA STARSPLLRI GEPDEIAGAA VFLASAAGTF
MTGQTMVIDG GATIS
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