| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_4007 |
|---|
| Symbol | |
|---|
| ID | 5091501 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 4789492 |
|---|
| End bp | 4790235 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 644743428 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001196336 |
|---|
| Protein GI | 146301745 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.466284 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAATT TAAAAGATAA AACAGCCGTA ATAACAGGTG GAAACAGCGG TATAGGATAT
TCTACAGCAA AACTGTTAAA AGAAGAGGGA GCGCAAGTTA TTATTACCGG AAGAAGAAAA
GAAGCAATCG AAAAAGCAGC ACTGGAATTA GGCGTTACGG CAATAACAGC AGATCAATCG
AGTATTTCTG ATATTGAAAG TCTGGCTTTA AAAGTTAAAC AGGATTTTGG TAAAGTAGAT
ATTCTTTTCA TCAATGCTGG AATTGCCGGA TTAGGTAATA TCGAACAAGC ATCAGAAGAA
CAATTCGATA GTATTATGAA TGTGAATTTT AAAGGTGCTT ATTTCACATT AAGCCGATTT
ATTCCGATTT TAAATGATGG TGCTTCGGTT GTTTTTCTTT CTTCAAATAC TGCCAGTATG
CCAGGACCGG AATCTTCGGT TTATTCTGCA AGTAAGACTG CTTTGAATTC AGTTATGAAA
TCAGCTGCTT TAGAATTAGC GCCTAGAAAA ATCAGAGTGA ATTCTGTTAG TCCGGGACCA
ACTCAAACGG AGGTTATGAA GAAAGTAGGT TTAGACGAAG CCACTGTAAA TGGTATTATG
GATATGGTGG TAGAAAAAGT GCCGTTAAAA CAAATGGGTA AAGCCGAAGA CGTTGCCAAA
ATGGTTTCTT ATGTAAGCAG TGATGCAGCA AAATTCATTA CCGGAGCAGA TTTTATTATG
GACGGCGGAA TGGTGTTAGC TTAA
|
|---|
| Protein sequence | MDNLKDKTAV ITGGNSGIGY STAKLLKEEG AQVIITGRRK EAIEKAALEL GVTAITADQS
SISDIESLAL KVKQDFGKVD ILFINAGIAG LGNIEQASEE QFDSIMNVNF KGAYFTLSRF
IPILNDGASV VFLSSNTASM PGPESSVYSA SKTALNSVMK SAALELAPRK IRVNSVSPGP
TQTEVMKKVG LDEATVNGIM DMVVEKVPLK QMGKAEDVAK MVSYVSSDAA KFITGADFIM
DGGMVLA
|
|---|
| |