Gene BamMC406_5564 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5564 
Symbol 
ID6182491 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp63616 
End bp64398 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content62% 
IMG OID641688696 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionYP_001815560 
Protein GI172064848 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACTGG ATGACAAGAT CGCGCTCGTG ACGGGCGCGG CAAGCGGTAT CGGCGCGGTG 
TGCGCGCGCA AGCTCGCGAT GGACGGCGCG ATGGTCGTTA TCGCGGACCT GAATCTCGAG
GCTGCGCGAA AGGTTGCCGA CGACATCGTC GGCAACGGCG GGAAGGCGTT GGCGATCGCC
ATGGACGTCA CCAGCGAGGA AGCCGTCGAC GCGGGGCTGG CCGAAACGGT AAGCCGGCTG
GGCGGAATCG ACGTGCTCGT GTCGAACGCA GGCATCCAGA TCGTCAACCG GATCGAGGAT
TACGCATTTT CGGACTGGAA GAAGATGCTG GCCATCCACC TCGATGGTGC GTTTCTGACG
ACGCGGGCCG CCATCAGGCA TATGTATGCG TCGAACAAGG GTGGCACCGT GATCTACATG
GGCTCGGTGC ATGCGCACGA GGCCTCGCCG CTCAAATCCG CCTATGTGAC CGCGAAACAC
GGGTTGCTCG GTCTCGCACG GGTTGTCGCG AAAGAAGGTG GACCGCGTGG CGTGCGTGCC
AACGTCGTGT GCCCCGGTTT CGTCAGGACC CCGCTGGTCG ACAAACAGAT CCCCGAGCAA
GCGAAGGTCC TCGACATCTC GGAACAACAG GTCGTCAGGG ACGTCATGCT GAAAGAGACG
GTCGACGGCG AATTCACGTC GCTGGTCGAT GTCGCGAACA CGGTTGCCTT CCTGGCCAGC
TTCGAATCGA ACGCGCTCAC CGGGCAATCG ATCGTCGTCA GCCACGGCTG GTTCATGCAG
TAA
 
Protein sequence
MALDDKIALV TGAASGIGAV CARKLAMDGA MVVIADLNLE AARKVADDIV GNGGKALAIA 
MDVTSEEAVD AGLAETVSRL GGIDVLVSNA GIQIVNRIED YAFSDWKKML AIHLDGAFLT
TRAAIRHMYA SNKGGTVIYM GSVHAHEASP LKSAYVTAKH GLLGLARVVA KEGGPRGVRA
NVVCPGFVRT PLVDKQIPEQ AKVLDISEQQ VVRDVMLKET VDGEFTSLVD VANTVAFLAS
FESNALTGQS IVVSHGWFMQ