Gene RSP_4004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSP_4004 
Symbol 
ID3711782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodobacter sphaeroides 2.4.1 
KingdomBacteria 
Replicon accessionNC_007488 
Strand
Start bp42730 
End bp43509 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content74% 
IMG OID640069333 
ProductShort-chain dehydrogenase/reductase SDR 
Protein accessionYP_345200 
Protein GI77404626 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.132038 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCGGT TCGAGGGGCG GGTCGCGCTC GTCACCGGCG GGGGCCGCGG CATCGGGCAG 
GCCATCGCCC GGCGCCTCGC CTCGGACGGG GCGCGGGTCT TCACGGCGCA GCGCGGCGCG
GACGCCGGGT TCGAGGCCAT CGCGGCCGAC TTCGCCGATG CGGACGCGCC CGCCCGCGCT
GTGGCCGAGG CGGTGGATCG GGCGGGGCGG CTCGACGTCT TGGTGAACAA TGCGGGCGTG
ATGCAGGAGG CGCGGGTCGA GGAGATGGCG CTGGCCGACT GGGAGCGCAC GATCCGCGTG
AACCTGACCG CGCCGTTCCT TGCGATCCGG GCGGCGCTGC CGCATCTGCG GGCCGTGCGG
GGCGCCATCG TCAATGTGGG CTCCATCGAG GGGCTGGGGG CGAACCCGCG CCATGCCGCC
TATTGCGCCT CGAAGGCGGG GCTGCACGGG CTGACGCGGG CGGTGGCCGT CGATCATGGC
GCGGAGGGCA TCCGCTGCAA CGCGGTCGCG CCGGGCTGGA TCGAGACGGA GCTGAACGAG
GCCTTCGTGG AAGCGATGCC CGACCCCGAG GCCTTCCGGC GCGGGATCGG CCGCATCCAT
CCCGTGGGCC GCACGGGCCA GCCCGAGGAG GTCGCGGCGC TGGTGGCCTG GCTCGCCTCG
GACGAGGCGG CCTTCGTGAC CGGGCAGGTC TGGACCGTCG ACGGAGGGCG GATGGCGCAG
CTGAGCCTGC CGCATGAGGA CTACTCGGCC GCAGCGCGCC ATTCCTTCCA GCGCAGATAG
 
Protein sequence
MSRFEGRVAL VTGGGRGIGQ AIARRLASDG ARVFTAQRGA DAGFEAIAAD FADADAPARA 
VAEAVDRAGR LDVLVNNAGV MQEARVEEMA LADWERTIRV NLTAPFLAIR AALPHLRAVR
GAIVNVGSIE GLGANPRHAA YCASKAGLHG LTRAVAVDHG AEGIRCNAVA PGWIETELNE
AFVEAMPDPE AFRRGIGRIH PVGRTGQPEE VAALVAWLAS DEAAFVTGQV WTVDGGRMAQ
LSLPHEDYSA AARHSFQRR