Gene RPB_2264 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_2264 
Symbol 
ID3909048 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp2612501 
End bp2613268 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content65% 
IMG OID637884160 
ProductShort-chain dehydrogenase/reductase SDR 
Protein accessionYP_485880 
Protein GI86749384 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.136651 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTTGT TCGACCTGAG CGGAAAAGTC GCTGTGATCA CCGGATCGTC GCGAGGCATC 
GGCAAGGCGA TCGCCGAGCG GATGGCCGAG CACGGCGCCA AGGTGGTGAT CTCGTCGCGC
AAGCAGGACG CCTGTGACGC CGTTGCCAAG TCGATCAATG ATGCGCGCGG GGCAGGGACG
GCACTGGCGA TCGCCGCCAA TATTTCCAGC AAGACCGACC TGGAGCGCCT CGCCAACGAA
GCGACCGCGG CGTTCGGCAA GATCGACGCG CTGGTCTGCA ACGCCGCGTC GAATCCGTAT
TACGGCCCGC AGTCGGGCAT CAGCGACGAT CAGTTCAGGA AGATTCTGGA CAACAACATC
GTCGCCAATC ACTGGCTGAT CAGCGCCGTT GCGCCGCAGA TGATCGCCCG CAAGGACGGT
TCGATCACCA TCGTCTCGTC GATCGGCGGC CTGAAGGGCT CGACCGTGAT CGGCGCCTAC
TGCATCTCCA AGGCCGCCGA CATGCAGCTG GCGCGCAACC TCGCCTGCGA ATATGGCGAG
CACAATATCC GCGTGAACTG CATCGCGCCG GGCTTGATCA AGACCGATTT CGCCCGCGCG
CTGTGGGAAA ACCCCGAGAC GCTGAAAGCC TCGACCGCGC GCTCGCCGCT GCAGCGGATC
GGCGAGCCAG ACGAAATCGC CGGCGCCGCT GTGTTCCTCG CCTCCGCCGC GGGCAGCTTC
ACGACGGGGC AGACGCTGGT GATCGACGGC GGCGCGACGA TCAGCTGA
 
Protein sequence
MSLFDLSGKV AVITGSSRGI GKAIAERMAE HGAKVVISSR KQDACDAVAK SINDARGAGT 
ALAIAANISS KTDLERLANE ATAAFGKIDA LVCNAASNPY YGPQSGISDD QFRKILDNNI
VANHWLISAV APQMIARKDG SITIVSSIGG LKGSTVIGAY CISKAADMQL ARNLACEYGE
HNIRVNCIAP GLIKTDFARA LWENPETLKA STARSPLQRI GEPDEIAGAA VFLASAAGSF
TTGQTLVIDG GATIS