| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4351 |
|---|
| Symbol | |
|---|
| ID | 5196846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4802819 |
|---|
| End bp | 4803625 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640583905 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001264829 |
|---|
| Protein GI | 148557247 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.48902 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGG ATCAGAATGG GGAAAAGCCG GTCGTCATCG TCACGGGCGG CGGCAGCGGC
ATCGGCGCCG CGGCGGCCCG GCGGCTGTCG CGCGAGTGGC GGGTGGCGAT ATGCGGCCGC
CGCAAGGCAC CGCTCGACGC GGTCGCGGCG GAGACGGGCG CGGTCCCCTT CGTCAGCGAC
GTCGGCGATC CGGAGGCCGC GCGCAAGCTG GTCGCCGACG TGGTCGCGCA TTTCGGCCGG
CTCGACGGCC TGGTGCTCAA CGCCGGCATC CTGATCAACG CGCCGTTCGG GGAAATGAGC
CTCGACGCCT GGAACCAGCA GATCGGCATC AACCTGACCG GCCCCTTCGT GCTGACCCAG
GCGGCGCTTC CGCACCTGCT GGCGCGCAAG GGCGCGGTCG TCTCGATCAC CTCGGTCGGC
GGGGTGCAGA CCGGCCCGGG CCTCGCCGCC TATTCGGCGT CCAAGGCCGG CCTCCAGCTG
ATGACGCAGG CGCTGGCCTA TGAGCATGCC CGCGACGGGC TGCGCGCCAA TATCGTCGCG
CCGGGCTGGA TCCGCACCGA GATGGGCGAC GAGGAGATGG AGACGATGCA GATCGCCGAC
GACCTCGAGG GCGCCTATGC CAAGGTCAGC GAGTTCGTGC CGCAGCGCCG CGCCGGCAGC
TCGGACGAGG CCGCCGAGGC AATCGCCTGG CTGCTCTCCC CCGCCGCCTC CTTCGTCAAC
GGCGCGGTGC TCGCGGTCGA CGGCGGCTCG CTGGTCGCCA ATGTCGGGAT GACCTTCTTC
GACAAGATCA CCGAGGGGGC GGCGTAA
|
|---|
| Protein sequence | MSQDQNGEKP VVIVTGGGSG IGAAAARRLS REWRVAICGR RKAPLDAVAA ETGAVPFVSD
VGDPEAARKL VADVVAHFGR LDGLVLNAGI LINAPFGEMS LDAWNQQIGI NLTGPFVLTQ
AALPHLLARK GAVVSITSVG GVQTGPGLAA YSASKAGLQL MTQALAYEHA RDGLRANIVA
PGWIRTEMGD EEMETMQIAD DLEGAYAKVS EFVPQRRAGS SDEAAEAIAW LLSPAASFVN
GAVLAVDGGS LVANVGMTFF DKITEGAA
|
|---|
| |