More than 300 homologs were found in PanDaTox collection
for query gene M446_2549 on replicon NC_010511
Organism: Methylobacterium sp. 4-46



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010511  M446_2549  short-chain dehydrogenase/reductase SDR  100 
 
 
293 aa  560  1e-158  Methylobacterium sp. 4-46  Bacteria  normal  0.0985309  normal 
 
 
-
 
NC_009523  RoseRS_0015  short-chain dehydrogenase/reductase SDR  33.08 
 
 
288 aa  119  4.9999999999999996e-26  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.725179 
 
 
-
 
NC_011831  Cagg_0860  short-chain dehydrogenase/reductase SDR  31.11 
 
 
287 aa  100  2e-20  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.943731  normal  0.246629 
 
 
-
 
NC_013440  Hoch_2073  short-chain dehydrogenase/reductase SDR  32.94 
 
 
292 aa  100  4e-20  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3758  short-chain dehydrogenase/reductase SDR  31.16 
 
 
284 aa  97.1  3e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0168044 
 
 
-
 
NC_013131  Caci_2613  short-chain dehydrogenase/reductase SDR  32.52 
 
 
298 aa  95.9  8e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.68402  normal 
 
 
-
 
NC_013441  Gbro_4327  short-chain dehydrogenase/reductase SDR  35.48 
 
 
312 aa  92.8  6e-18  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_0964  short-chain dehydrogenase/reductase SDR  33.94 
 
 
298 aa  92.8  6e-18  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.468031  normal 
 
 
-
 
NC_003296  RS05496  putative oxidoreductase protein  35.91 
 
 
306 aa  92.4  7e-18  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.58284 
 
 
-
 
NC_013595  Sros_5377  putative retinol dehydrogenase  31.58 
 
 
296 aa  92  1e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  0.637386  normal  0.0926246 
 
 
-
 
NC_012880  Dd703_1598  short-chain dehydrogenase/reductase SDR  33.82 
 
 
306 aa  91.3  2e-17  Dickeya dadantii Ech703  Bacteria  normal  0.0639963  n/a   
 
 
-
 
NC_010725  Mpop_3355  short-chain dehydrogenase/reductase SDR  30.42 
 
 
286 aa  90.1  4e-17  Methylobacterium populi BJ001  Bacteria  normal  0.886848  normal 
 
 
-
 
NC_013235  Namu_0625  short-chain dehydrogenase/reductase SDR  28.21 
 
 
326 aa  87.4  3e-16  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3159  short-chain dehydrogenase/reductase SDR  30.04 
 
 
281 aa  86.3  6e-16  Methylobacterium extorquens PA1  Bacteria  normal  0.244285  normal 
 
 
-
 
NC_009051  Memar_1150  short-chain dehydrogenase/reductase SDR  32.21 
 
 
281 aa  85.9  8e-16  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_014158  Tpau_0851  short-chain dehydrogenase/reductase SDR  30.04 
 
 
304 aa  84.3  0.000000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0651953  n/a   
 
 
-
 
NC_010831  Cphamn1_0763  short chain dehydrogenase  29.85 
 
 
316 aa  84.3  0.000000000000002  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.920637  normal  0.460734 
 
 
-
 
NC_009718  Fnod_0545  short-chain dehydrogenase/reductase SDR  28.1 
 
 
340 aa  84.7  0.000000000000002  Fervidobacterium nodosum Rt17-B1  Bacteria  hitchhiker  0.00109277  n/a   
 
 
-
 
NC_013093  Amir_4942  short-chain dehydrogenase/reductase SDR  34 
 
 
335 aa  83.6  0.000000000000004  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.000012318  n/a   
 
 
-
 
NC_014151  Cfla_3573  short-chain dehydrogenase/reductase SDR  32.09 
 
 
298 aa  83.2  0.000000000000005  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3483  short-chain dehydrogenase/reductase SDR  28.74 
 
 
281 aa  82.8  0.000000000000006  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.624143  normal 
 
 
-
 
NC_009921  Franean1_0077  short-chain dehydrogenase/reductase SDR  31.23 
 
 
271 aa  82.4  0.000000000000009  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_05400  short-chain dehydrogenase of unknown substrate specificity  32.41 
 
 
274 aa  80.5  0.00000000000003  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1947  short-chain dehydrogenase/reductase SDR  34.06 
 
 
308 aa  80.1  0.00000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.156536  normal  0.0102569 
 
 
-
 
NC_009523  RoseRS_4028  short-chain dehydrogenase/reductase SDR  30.68 
 
 
292 aa  79.7  0.00000000000005  Roseiflexus sp. RS-1  Bacteria  normal  0.251041  normal 
 
 
-
 
NC_012850  Rleg_2094  short-chain dehydrogenase/reductase SDR  30.62 
 
 
322 aa  79.3  0.00000000000007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.26328  normal  0.398139 
 
 
-
 
NC_009664  Krad_2789  short chain dehydrogenase  32.3 
 
 
304 aa  79  0.00000000000008  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.625532  normal  0.190884 
 
 
-
 
NC_013131  Caci_1546  short-chain dehydrogenase/reductase SDR  32.82 
 
 
305 aa  79.3  0.00000000000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0325177 
 
 
-
 
NC_007952  Bxe_B1138  putative dehydrogenase  31.25 
 
 
329 aa  79  0.00000000000008  Burkholderia xenovorans LB400  Bacteria  normal  0.530654  normal 
 
 
-
 
NC_008541  Arth_1067  short-chain dehydrogenase/reductase SDR  28.64 
 
 
279 aa  79  0.00000000000008  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1583  short-chain dehydrogenase/reductase SDR  27.89 
 
 
349 aa  79  0.00000000000009  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.216927  normal  0.0361789 
 
 
-
 
NC_011365  Gdia_1453  short-chain dehydrogenase/reductase SDR  31.68 
 
 
323 aa  78.2  0.0000000000002  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0197  short-chain dehydrogenase/reductase SDR  30 
 
 
280 aa  77.8  0.0000000000002  Spirosoma linguale DSM 74  Bacteria  normal  0.824425  normal 
 
 
-
 
NC_010581  Bind_0032  short chain dehydrogenase  30.88 
 
 
300 aa  76.6  0.0000000000004  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.249754  normal 
 
 
-
 
NC_010581  Bind_0326  short-chain dehydrogenase/reductase SDR  31.4 
 
 
325 aa  76.3  0.0000000000005  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.167691 
 
 
-
 
NC_009077  Mjls_0596  short chain dehydrogenase  30.39 
 
 
300 aa  76.3  0.0000000000006  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_1137  short-chain dehydrogenase/reductase SDR  31.58 
 
 
273 aa  75.9  0.0000000000007  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00939747 
 
 
-
 
NC_009077  Mjls_0587  short chain dehydrogenase  31.7 
 
 
306 aa  75.9  0.0000000000007  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3678  short-chain dehydrogenase/reductase SDR  30.68 
 
 
292 aa  75.9  0.0000000000008  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0772847  normal  0.304058 
 
 
-
 
NC_009380  Strop_0722  short-chain dehydrogenase/reductase SDR  33.18 
 
 
284 aa  75.1  0.000000000001  Salinispora tropica CNB-440  Bacteria  normal  normal  0.182055 
 
 
-
 
NC_011666  Msil_3314  short-chain dehydrogenase/reductase SDR  28.99 
 
 
320 aa  75.1  0.000000000001  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0167098 
 
 
-
 
NC_007794  Saro_2767  short-chain dehydrogenase/reductase SDR  29.65 
 
 
327 aa  74.3  0.000000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_0605  short chain dehydrogenase  29.9 
 
 
300 aa  74.7  0.000000000002  Mycobacterium sp. MCS  Bacteria  normal  0.140006  n/a   
 
 
-
 
NC_008705  Mkms_0618  short chain dehydrogenase  29.9 
 
 
300 aa  74.7  0.000000000002  Mycobacterium sp. KMS  Bacteria  normal  0.673408  normal 
 
 
-
 
NC_011059  Paes_0665  short chain dehydrogenase  30.69 
 
 
301 aa  74.3  0.000000000002  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000125417  hitchhiker  0.00844242 
 
 
-
 
NC_010578  Bind_3909  short-chain dehydrogenase/reductase SDR  28.78 
 
 
307 aa  74.3  0.000000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_1049  short-chain dehydrogenase/reductase SDR  30.43 
 
 
326 aa  73.6  0.000000000003  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0596  short chain dehydrogenase  31.25 
 
 
306 aa  73.6  0.000000000004  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0609  short chain dehydrogenase  31.25 
 
 
306 aa  73.6  0.000000000004  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_3334  short chain dehydrogenase  31.43 
 
 
299 aa  73.2  0.000000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009355  OSTLU_5468  predicted protein  32.06 
 
 
292 aa  73.2  0.000000000005  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  n/a   
 
 
-
 
NC_010338  Caul_4436  short-chain dehydrogenase/reductase SDR  30.97 
 
 
326 aa  72.8  0.000000000006  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_3350  short-chain dehydrogenase/reductase SDR  34.93 
 
 
314 aa  72.4  0.000000000007  Actinosynnema mirum DSM 43827  Bacteria  normal  0.244541  n/a   
 
 
-
 
NC_013093  Amir_5862  short-chain dehydrogenase/reductase SDR  32.49 
 
 
297 aa  72.4  0.000000000007  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12290  short chain dehydrogenase  29.96 
 
 
317 aa  71.6  0.00000000001  Mycobacterium tuberculosis F11  Bacteria  normal  0.521938  normal 
 
 
-
 
NC_011004  Rpal_0589  short-chain dehydrogenase/reductase SDR  29.06 
 
 
297 aa  72  0.00000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.580908  n/a   
 
 
-
 
NC_011729  PCC7424_4969  protochlorophyllide oxidoreductase  24.58 
 
 
325 aa  72  0.00000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009952  Dshi_1955  putative short-chain dehydrogenase  29.21 
 
 
598 aa  71.6  0.00000000002  Dinoroseobacter shibae DFL 12  Bacteria  hitchhiker  0.00955158  hitchhiker  0.00174251 
 
 
-
 
NC_013743  Htur_0520  short-chain dehydrogenase/reductase SDR  31.55 
 
 
317 aa  71.2  0.00000000002  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009338  Mflv_0143  short chain dehydrogenase  30.15 
 
 
303 aa  71.6  0.00000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1016  short-chain dehydrogenase/reductase SDR  30.17 
 
 
324 aa  70.5  0.00000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.010862 
 
 
-
 
NC_014158  Tpau_0852  short-chain dehydrogenase/reductase SDR  28.78 
 
 
307 aa  70.1  0.00000000004  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0401995  n/a   
 
 
-
 
NC_012029  Hlac_1313  short-chain dehydrogenase/reductase SDR  29.19 
 
 
320 aa  70.1  0.00000000004  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal  0.435553 
 
 
-
 
NC_009338  Mflv_2120  short-chain dehydrogenase/reductase SDR  30.54 
 
 
313 aa  70.1  0.00000000005  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.289594 
 
 
-
 
NC_009953  Sare_0668  short-chain dehydrogenase/reductase SDR  32.84 
 
 
288 aa  69.7  0.00000000006  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.512596 
 
 
-
 
NC_009921  Franean1_3365  short-chain dehydrogenase/reductase SDR  28.84 
 
 
296 aa  69.3  0.00000000006  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009976  P9211_14681  dehydrogenase  27.55 
 
 
311 aa  69.7  0.00000000006  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal  0.0164309 
 
 
-
 
NC_009338  Mflv_0151  short chain dehydrogenase  28.78 
 
 
305 aa  69.7  0.00000000006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4584  short-chain dehydrogenase/reductase SDR  32.51 
 
 
338 aa  69.3  0.00000000007  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.200528  normal  0.701446 
 
 
-
 
NC_010085  Nmar_0044  short-chain dehydrogenase/reductase SDR  26.63 
 
 
264 aa  69.3  0.00000000008  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_013037  Dfer_0839  short-chain dehydrogenase/reductase SDR  28.28 
 
 
304 aa  68.9  0.00000000008  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.177477  normal  0.189843 
 
 
-
 
NC_013922  Nmag_2915  short-chain dehydrogenase/reductase SDR  31.13 
 
 
326 aa  68.9  0.00000000009  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_009921  Franean1_6815  short-chain dehydrogenase/reductase SDR  29.78 
 
 
312 aa  68.6  0.0000000001  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2779  short-chain dehydrogenase/reductase SDR  31.9 
 
 
292 aa  68.6  0.0000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0384845  normal  0.402092 
 
 
-
 
NC_008146  Mmcs_4252  short-chain dehydrogenase/reductase SDR  30.41 
 
 
289 aa  68.6  0.0000000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_012029  Hlac_1920  short-chain dehydrogenase/reductase SDR  31.5 
 
 
290 aa  68.6  0.0000000001  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.108282  normal 
 
 
-
 
NC_008705  Mkms_4338  short-chain dehydrogenase/reductase SDR  30.41 
 
 
289 aa  68.6  0.0000000001  Mycobacterium sp. KMS  Bacteria  normal  0.582042  normal  0.314505 
 
 
-
 
NC_008817  P9515_15241  short-chain dehydrogenase/reductase  23.23 
 
 
309 aa  68.6  0.0000000001  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.957013  n/a   
 
 
-
 
NC_009077  Mjls_4631  short-chain dehydrogenase/reductase SDR  30.41 
 
 
289 aa  68.6  0.0000000001  Mycobacterium sp. JLS  Bacteria  normal  0.79705  normal  0.423189 
 
 
-
 
NC_011365  Gdia_1943  short-chain dehydrogenase/reductase SDR  32.37 
 
 
320 aa  68.2  0.0000000002  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.756699  normal 
 
 
-
 
NC_013510  Tcur_1813  short-chain dehydrogenase/reductase SDR  31.16 
 
 
301 aa  67.8  0.0000000002  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000491998  n/a   
 
 
-
 
NC_009565  TBFG_10444  short chain dehydrogenase  29.52 
 
 
311 aa  67  0.0000000003  Mycobacterium tuberculosis F11  Bacteria  normal  0.270892  normal 
 
 
-
 
NC_007513  Syncc9902_2219  short-chain dehydrogenase/reductase  28.28 
 
 
301 aa  67  0.0000000003  Synechococcus sp. CC9902  Bacteria  normal  0.498421  n/a   
 
 
-
 
NC_012858  Rleg_6615  short chain dehydrogenase  30.26 
 
 
271 aa  67.4  0.0000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.522985  normal  0.0823373 
 
 
-
 
NC_013947  Snas_3223  short-chain dehydrogenase/reductase SDR  31.86 
 
 
298 aa  67.4  0.0000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.928112  hitchhiker  0.00000218148 
 
 
-
 
NC_009972  Haur_3830  short-chain dehydrogenase/reductase SDR  26.32 
 
 
285 aa  67.4  0.0000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000468983  n/a   
 
 
-
 
NC_013037  Dfer_1528  short-chain dehydrogenase/reductase SDR  30.96 
 
 
246 aa  67  0.0000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.606354  normal 
 
 
-
 
NC_009338  Mflv_1940  short-chain dehydrogenase/reductase SDR  30 
 
 
288 aa  67.4  0.0000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.944669 
 
 
-
 
NC_010511  M446_6655  short-chain dehydrogenase/reductase SDR  32.37 
 
 
314 aa  67  0.0000000004  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0106464 
 
 
-
 
NC_007335  PMN2A_1871  protochlorophyllide oxidoreductase  24.75 
 
 
337 aa  66.6  0.0000000004  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0016  short-chain dehydrogenase/reductase SDR  30.7 
 
 
260 aa  66.6  0.0000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4786  short-chain dehydrogenase/reductase SDR  29.95 
 
 
288 aa  66.6  0.0000000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008819  NATL1_05961  protochlorophyllide oxidoreductase  24.75 
 
 
337 aa  66.6  0.0000000004  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.641306 
 
 
-
 
NC_009485  BBta_7223  Short-chain dehydrogenase/reductase SDR  27.86 
 
 
274 aa  66.2  0.0000000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.109906  normal 
 
 
-
 
NC_010625  Bphy_5875  short-chain dehydrogenase/reductase SDR  32.64 
 
 
249 aa  66.6  0.0000000005  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1529  short-chain dehydrogenase/reductase SDR  27.57 
 
 
328 aa  66.2  0.0000000006  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.392114 
 
 
-
 
NC_014230  CA2559_00455  probable oxidoreductase  24.04 
 
 
318 aa  66.2  0.0000000006  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  31.13 
 
 
262 aa  66.2  0.0000000006  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1065  short-chain dehydrogenase/reductase SDR  30.34 
 
 
312 aa  66.2  0.0000000006  Conexibacter woesei DSM 14684  Bacteria  normal  0.334573  normal  0.72801 
 
 
-
 
NC_008726  Mvan_0762  short chain dehydrogenase  29.65 
 
 
302 aa  66.2  0.0000000006  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.812053  normal  0.782214 
 
 
-
 
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