Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_4942 |
Symbol | |
ID | 8329140 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | + |
Start bp | 5894806 |
End bp | 5895813 |
Gene Length | 1008 bp |
Protein Length | 335 aa |
Translation table | 11 |
GC content | 76% |
IMG OID | 644945382 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_003102614 |
Protein GI | 256378954 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000012318 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGAGCTCC CGCTCCCGGT GGGGTTCTCC CCTGCGCTGG TCGAGCGCGC GGGCGCTGGG GGCGGGATGA TCCGGGGCAT GTCGTGGCAG AGGTTCGTCG ACACCGCGCT GGACCGGTCG CTGCTGGGGT ACACGCGCGT GGGGTGCGCG GTCCGGCGGG CGTGGTGGCC CGCGGACGCG CCCGCCGGGG CGCTGGCGGG GCGGGTCGTC GTGGTGACCG GCGCCAAGGC CGGGCTCGGG TTCGCCGCCG CGTTGGGGTT GGCGCGGTTG GGGGCGTCGC TGCGGCTGGT GGTGCGCGGT GACGGCGGGC GGGCGCGCGA GCTGATCAGG CGGGCCGTGC CGGGGGCCGA CGTGACCGTG GACCGGTGCG ACGTGAGCCT GCTGTCCGAG GTGCGCGACC TCGCGGCGGG CCTGGGGCGG GTGGACGTGC TGGTGCACAA CGCGGGCGTG CTGCCGTCCG CGCGGACCGA GACGGCCGAG GGCAACGAGG TCATGCTGGC CACCCACGTG CTCGGCCCGC ACCTGCTGAC GTCCCTGCTG CGCGACCGGC TGCCGGTGGG CGCGCGGGTG ATCTGGGTGG CGTCGGGCGG GATGTACTCG CAGCCGCTGG TCGTGGACGA TCTGCAGTAC GAGCGCGGGG AGTACCGGCC GACGACCGGG TACGCGCGCA CCAAGCGGAT GCAGGTGGTG CTGGCGCGGC TGTGGTCGCA GCGGCTGGAC GGCGTCGCGG TGCACTCGAC GCACCCCGGT TGGGCGAACA CCGGCGGGGT GGCGACGTCG CTGCCGCGGT TCCACGCGGT GACCAGGCCG CTGTTGCGCT CGCCGGAGCG CGGGGCGGAC ACGATCGTGT GGCTGGCGGC GGCCAAGGAG CCGGGGTGGA GCACGGGGTT GCTGTGGCAC GACCGGGAGG TTCGGCCGCT GCACTACCTG CGGTCGACGT ACGAGCGGTC GCAGCGGCCG AGCGCGCTGT GGGACGGGGT GGAGCGGTTG ACGCGGTCGG CGGGGTAG
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Protein sequence | MELPLPVGFS PALVERAGAG GGMIRGMSWQ RFVDTALDRS LLGYTRVGCA VRRAWWPADA PAGALAGRVV VVTGAKAGLG FAAALGLARL GASLRLVVRG DGGRARELIR RAVPGADVTV DRCDVSLLSE VRDLAAGLGR VDVLVHNAGV LPSARTETAE GNEVMLATHV LGPHLLTSLL RDRLPVGARV IWVASGGMYS QPLVVDDLQY ERGEYRPTTG YARTKRMQVV LARLWSQRLD GVAVHSTHPG WANTGGVATS LPRFHAVTRP LLRSPERGAD TIVWLAAAKE PGWSTGLLWH DREVRPLHYL RSTYERSQRP SALWDGVERL TRSAG
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