Gene Amir_4942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_4942 
Symbol 
ID8329140 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp5894806 
End bp5895813 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content76% 
IMG OID644945382 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003102614 
Protein GI256378954 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000012318 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAGCTCC CGCTCCCGGT GGGGTTCTCC CCTGCGCTGG TCGAGCGCGC GGGCGCTGGG 
GGCGGGATGA TCCGGGGCAT GTCGTGGCAG AGGTTCGTCG ACACCGCGCT GGACCGGTCG
CTGCTGGGGT ACACGCGCGT GGGGTGCGCG GTCCGGCGGG CGTGGTGGCC CGCGGACGCG
CCCGCCGGGG CGCTGGCGGG GCGGGTCGTC GTGGTGACCG GCGCCAAGGC CGGGCTCGGG
TTCGCCGCCG CGTTGGGGTT GGCGCGGTTG GGGGCGTCGC TGCGGCTGGT GGTGCGCGGT
GACGGCGGGC GGGCGCGCGA GCTGATCAGG CGGGCCGTGC CGGGGGCCGA CGTGACCGTG
GACCGGTGCG ACGTGAGCCT GCTGTCCGAG GTGCGCGACC TCGCGGCGGG CCTGGGGCGG
GTGGACGTGC TGGTGCACAA CGCGGGCGTG CTGCCGTCCG CGCGGACCGA GACGGCCGAG
GGCAACGAGG TCATGCTGGC CACCCACGTG CTCGGCCCGC ACCTGCTGAC GTCCCTGCTG
CGCGACCGGC TGCCGGTGGG CGCGCGGGTG ATCTGGGTGG CGTCGGGCGG GATGTACTCG
CAGCCGCTGG TCGTGGACGA TCTGCAGTAC GAGCGCGGGG AGTACCGGCC GACGACCGGG
TACGCGCGCA CCAAGCGGAT GCAGGTGGTG CTGGCGCGGC TGTGGTCGCA GCGGCTGGAC
GGCGTCGCGG TGCACTCGAC GCACCCCGGT TGGGCGAACA CCGGCGGGGT GGCGACGTCG
CTGCCGCGGT TCCACGCGGT GACCAGGCCG CTGTTGCGCT CGCCGGAGCG CGGGGCGGAC
ACGATCGTGT GGCTGGCGGC GGCCAAGGAG CCGGGGTGGA GCACGGGGTT GCTGTGGCAC
GACCGGGAGG TTCGGCCGCT GCACTACCTG CGGTCGACGT ACGAGCGGTC GCAGCGGCCG
AGCGCGCTGT GGGACGGGGT GGAGCGGTTG ACGCGGTCGG CGGGGTAG
 
Protein sequence
MELPLPVGFS PALVERAGAG GGMIRGMSWQ RFVDTALDRS LLGYTRVGCA VRRAWWPADA 
PAGALAGRVV VVTGAKAGLG FAAALGLARL GASLRLVVRG DGGRARELIR RAVPGADVTV
DRCDVSLLSE VRDLAAGLGR VDVLVHNAGV LPSARTETAE GNEVMLATHV LGPHLLTSLL
RDRLPVGARV IWVASGGMYS QPLVVDDLQY ERGEYRPTTG YARTKRMQVV LARLWSQRLD
GVAVHSTHPG WANTGGVATS LPRFHAVTRP LLRSPERGAD TIVWLAAAKE PGWSTGLLWH
DREVRPLHYL RSTYERSQRP SALWDGVERL TRSAG