| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1955 |
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| Symbol | |
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| ID | 5712949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2048152 |
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| End bp | 2049948 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641267880 |
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| Product | putative short-chain dehydrogenase |
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| Protein accession | YP_001533297 |
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| Protein GI | 159044503 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG2910] Putative NADH-flavin reductase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00955158 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00174251 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATACC TTGTGACGGA TGCGGCGGGC GCGGTCGGGC ATCGCCTCGC CGCGACCCTT
GTGGCCGCGG GGCACGAGGT GCTGGCCTTC TCGGACAGCC CCGTCAATGG GGTGGCCAGC
CGGGCCTGGC CCACCCGTGC GGACGTGCTG GCCAGGGCGC TGGCGGGGGT GGACGTGATC
TGCGCGGTGG ACCTGGCGAC GGTCGCGCCG GACGCGGCCC CGGCGCTGCT CAAACGTCTG
GACAAGCTGC GGGTTGCGGC GGGCAAGGCC GGGTGCGGCC GGTTCGTCCT GCTGGGGCGC
GCCGATATCT ACGACCCCGC GCTTCTGGCC GACAAGACGC TGCTGGAACG CTCGGCCACC
GCCGCGCCCG CCGACCTCGC CCCACCTGCG GCGGCGGCCC TCGCGCTGGA GGAGAGCCTG
CGCGCCGGCG CGGGGCTCGA CTGGACAATC CTGCGCGCGC CGATGATCCT CGCCCCCGAC
AGCGCCGAGG CCAAGGCCCT CTTCCGCCGC ATCCTGATCG ACGACGCCCC GTCGCCCGCC
CGGTTCCACC CGGTCGATGC CCGGGACGTG GCCACGGCCC TGGCCACCCT CGGCACGCAC
GACCGCGCAG GGGGGCAGGT GTTCAACATC GCCGCCCCCG CGGCCCTCGC CGCCCGGACC
CTGGACCAGG AGCTGGGCCG GCTCGCGCGG CTGCTGAACG ACGAGGCCAC GCCGCAGGAC
AAGCTCCGCC CGCCCCACCA GGTCGCGGAC CCGGTGCTGG CCACGGACAA GCTCGCGCGC
CTGACCGGCG TCACCCCGAC GCGGCCGATC TGGGTCAGCC TCGCCGAGAC GATGCAGCAG
GTGATGAAGG ACCTGCGCGC CGACGGCACC CTCCCGCCGC TGCCCGAGAA GATCAACCCG
GTCGTCAAGG CAGTGGAGTT GGGGCAAAAA CTGCTCGCCG GCAAGACCGC GGTGATCACC
GGCGTGACCT CCGGCATCGG CCGCGCGACC AGCCTGCTGC TGTCGCGGCT CGGGGCCACG
GTGGTGGGCA TCGCCCGCAA TGCCGAGGCC GGGGAAGCCT GGGAAGCGGC CCTGGCCGAA
GGCCGCCACA CCGTGCCCGG CCATTTCATC CAGGCCGACC TGATGTCCTT TGCCCGGATC
CGCACCCTCG CCGCCGACCT CGCCACGCGC TTTCCGCGGA TCGACATCCT GATCAACAAT
GCGGGCGCGA ACTTCCCCAC CCGGCGCCTG ACCGAGGACG GGGTCGAGGC CACCCTGGCG
ATCAACCATT TCGCGCCCTT CTTGCTGACC AACCTGCTGG CGGGCCCGCT GAAGGCGGCC
CCGGCGGCGC GGATCATCAT GGTGAATTCC GACTGGCACC GCCGCTCCCT GCCGGACATG
CACGACCTGC AGATGGAGAG CGGCTATCGC ACGGGCGAGG CCTATTGCCG GGCCAAGTTC
ATGAATTTGC AGATCACCTA CGCCATGGCC GCCCTGCTGG ACGGCACCAA CGTGACCGTG
AACGCGATCC ATCCCGGGGT GGTCCGCACG GGCATCTCGA CCCGCAACAC CGACGGCGCG
CCCCAGGTCC CCGCCCAGGC CCGCGAACGC GCGCAACAGC GGATGATCTC GCCGGAGTTT
TCCGCCGTCT ACCTCGCCAG CCTCGCCACC GCACCGGACT ACGAAGGCCA GAGCGGGCTC
TACCTCGATA CCGACGAGAT CAAGCAGTCT CACGAGGCCA CCTATGACGA GGATTGGGCC
TGGCAGATCT GGGAATGGAG CGCGCAGATC ACCGGGCTGA CCCCGGCCTC CGCCTGA
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| Protein sequence | MKYLVTDAAG AVGHRLAATL VAAGHEVLAF SDSPVNGVAS RAWPTRADVL ARALAGVDVI
CAVDLATVAP DAAPALLKRL DKLRVAAGKA GCGRFVLLGR ADIYDPALLA DKTLLERSAT
AAPADLAPPA AAALALEESL RAGAGLDWTI LRAPMILAPD SAEAKALFRR ILIDDAPSPA
RFHPVDARDV ATALATLGTH DRAGGQVFNI AAPAALAART LDQELGRLAR LLNDEATPQD
KLRPPHQVAD PVLATDKLAR LTGVTPTRPI WVSLAETMQQ VMKDLRADGT LPPLPEKINP
VVKAVELGQK LLAGKTAVIT GVTSGIGRAT SLLLSRLGAT VVGIARNAEA GEAWEAALAE
GRHTVPGHFI QADLMSFARI RTLAADLATR FPRIDILINN AGANFPTRRL TEDGVEATLA
INHFAPFLLT NLLAGPLKAA PAARIIMVNS DWHRRSLPDM HDLQMESGYR TGEAYCRAKF
MNLQITYAMA ALLDGTNVTV NAIHPGVVRT GISTRNTDGA PQVPAQARER AQQRMISPEF
SAVYLASLAT APDYEGQSGL YLDTDEIKQS HEATYDEDWA WQIWEWSAQI TGLTPASA
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