| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05496 |
|---|
| Symbol | RSp1123 |
|---|
| ID | 1223435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 1419992 |
|---|
| End bp | 1420912 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637240988 |
|---|
| Product | putative oxidoreductase protein |
|---|
| Protein accession | NP_522684 |
|---|
| Protein GI | 17549344 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.58284 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCGC GGAACGGTTT TACCGAAGCA GACGTGCCGG ACCAGTCCGG CAAAGGCTTC
ATCGTCACCG GCGCCAATAC CGGCCTCGGC CTTGAAACGT CGCGCGTGCT GGCGGCACGC
GGGGCGCGCG TCCTGCTTGC GTGCCGGGAT CGATCGAAGG CCGAGGCGGC GATGGCACAC
ATCCGGCAGA CCCACCCGGG CGCCGACCTG GCATTCCTGC CGCTCGATCT GGCGGACCTG
GCCAGCGTGC GAGCCGCGGC CGGGCAGGCG ATGACGGCGC CGCGCATCGA CGCGCTCATC
AACAATGCCG GCGTGATGAT GCCGCCGCTG ATGCGCACCA CGCAGGGCTT CGAACTGCAG
CTCGGCGTCA ACCACCTGGG CGGCTTCGCG CTGACCGCGC TGCTCCTGCC CAAGCTGGCG
CAGACGCCGG GATCGCGGGT CGTCGTGACG TCCAGCCTTG CCCATCGCGG GGCGAGCATC
GACTGGGATG ACCTCAGCGC AGCGACGCGC TACAACCGCG TGAAACGCTA CGGCGCCAGC
AAGCTCGCCA ACGCGCTCTT CTTTTTTGAG CTGGATCGCC GCTTGCGCGC GTCGGGGTCG
CCCGTCACCG CGGTCGGCTG CCATCCGGGG GCGGCGGTGA CCGACCTGGT GCGCTATATG
GGAGCGCTTC AGCTATTGCA GCCGCTGGTC CGGCGCTTCC TCAACACCGC TGCGATGGGC
GCGTGGCCCA CGCTGCAAGC GGCCACCGGG CCGGTGCAAC CCGGCGGCTA CTACGGCCCG
ACGGGCTTGC GCGGAATCCG CGGCCCCTCG GGCCGGGCCA CCCGGTCCGC GCAGGCGCAA
GACCCGCTGC TTGCACAGCG GCTCTGGGAT GTGTCGATCG CCATGACTGG CATCGACCCC
GGGCTGCCCG TGGAAAATTA A
|
|---|
| Protein sequence | MSARNGFTEA DVPDQSGKGF IVTGANTGLG LETSRVLAAR GARVLLACRD RSKAEAAMAH
IRQTHPGADL AFLPLDLADL ASVRAAAGQA MTAPRIDALI NNAGVMMPPL MRTTQGFELQ
LGVNHLGGFA LTALLLPKLA QTPGSRVVVT SSLAHRGASI DWDDLSAATR YNRVKRYGAS
KLANALFFFE LDRRLRASGS PVTAVGCHPG AAVTDLVRYM GALQLLQPLV RRFLNTAAMG
AWPTLQAATG PVQPGGYYGP TGLRGIRGPS GRATRSAQAQ DPLLAQRLWD VSIAMTGIDP
GLPVEN
|
|---|
| |