More than 300 homologs were found in PanDaTox collection
for query gene Bphyt_6677 on replicon NC_010676
Organism: Burkholderia phytofirmans PsJN



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010676  Bphyt_6677  response regulator receiver protein  100 
 
 
125 aa  250  4.0000000000000004e-66  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5523  response regulator receiver protein  38.66 
 
 
122 aa  89.4  2e-17  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0944  response regulator receiver protein  44.55 
 
 
136 aa  88.6  2e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2250  response regulator receiver domain-containing protein  39.66 
 
 
123 aa  87  7e-17  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5548  DNA-binding response regulator, LuxR family  40.16 
 
 
212 aa  81.3  0.000000000000005  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_5502  response regulator receiver protein  39.81 
 
 
136 aa  80.1  0.00000000000001  Burkholderia phymatum STM815  Bacteria  normal  0.020979  normal 
 
 
-
 
NC_007964  Nham_0873  response regulator receiver domain-containing protein  35.96 
 
 
135 aa  79.3  0.00000000000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1268  two component LuxR family transcriptional regulator  42.48 
 
 
220 aa  79.3  0.00000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3713  two component LuxR family transcriptional regulator  43.12 
 
 
208 aa  77  0.00000000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.222966  normal 
 
 
-
 
NC_009621  Smed_5521  response regulator receiver protein  36.21 
 
 
120 aa  77  0.00000000000009  Sinorhizobium medicae WSM419  Bacteria  normal  0.0747322  normal 
 
 
-
 
NC_012848  Rleg_5189  two component transcriptional regulator, LuxR family  40.18 
 
 
213 aa  75.9  0.0000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.814448  normal  0.223105 
 
 
-
 
NC_010552  BamMC406_4615  two component LuxR family transcriptional regulator  36.61 
 
 
218 aa  75.5  0.0000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3714  response regulator receiver protein  36.61 
 
 
256 aa  75.5  0.0000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.400104  normal 
 
 
-
 
NC_009485  BBta_7459  nodulation protein W, two-component transcriptional regulator  35.09 
 
 
219 aa  75.5  0.0000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3108  LuxR response regulator receiver  38.6 
 
 
202 aa  75.1  0.0000000000003  Dechloromonas aromatica RCB  Bacteria  normal  0.786061  normal 
 
 
-
 
NC_009719  Plav_2356  response regulator receiver protein  38.98 
 
 
215 aa  75.1  0.0000000000003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.504321 
 
 
-
 
NC_012858  Rleg_6855  response regulator receiver protein  35.04 
 
 
124 aa  74.7  0.0000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.508442  normal 
 
 
-
 
NC_011988  Avi_5502  two component response regulator  37.17 
 
 
212 aa  74.7  0.0000000000004  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1546  response regulator receiver protein  36.97 
 
 
131 aa  74.3  0.0000000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0280611  normal  0.028816 
 
 
-
 
NC_010625  Bphy_5693  two component LuxR family transcriptional regulator  35.66 
 
 
224 aa  74.3  0.0000000000005  Burkholderia phymatum STM815  Bacteria  normal  normal  0.247452 
 
 
-
 
NC_010622  Bphy_0645  two component LuxR family transcriptional regulator  39.66 
 
 
240 aa  74.3  0.0000000000006  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1545  two component transcriptional regulator, LuxR family  37.84 
 
 
218 aa  73.9  0.0000000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0982964  normal  0.0521608 
 
 
-
 
NC_011004  Rpal_3839  two component transcriptional regulator, LuxR family  38.21 
 
 
210 aa  73.9  0.0000000000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.287356  n/a   
 
 
-
 
NC_009621  Smed_5632  response regulator receiver protein  38.39 
 
 
140 aa  73.9  0.0000000000007  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.653856 
 
 
-
 
NC_008825  Mpe_A2536  two component regulator  39.02 
 
 
204 aa  73.6  0.0000000000009  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.378867 
 
 
-
 
NC_008825  Mpe_A0811  two-component response regulator  39.13 
 
 
209 aa  73.2  0.000000000001  Methylibium petroleiphilum PM1  Bacteria  normal  0.184612  normal 
 
 
-
 
NC_004311  BRA0042  LuxR family DNA-binding response regulator  35.4 
 
 
212 aa  72.4  0.000000000002  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0038  LuxR family DNA-binding response regulator  35.4 
 
 
212 aa  72.4  0.000000000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5456  two component transcriptional regulator, LuxR family  38.05 
 
 
230 aa  71.6  0.000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.154935  hitchhiker  0.00976207 
 
 
-
 
NC_011368  Rleg2_5458  two component transcriptional regulator, LuxR family  37.96 
 
 
213 aa  72  0.000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0682828  normal  0.0164406 
 
 
-
 
NC_007005  Psyr_5088  LuxR response regulator receiver  36.07 
 
 
212 aa  71.6  0.000000000004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3260  two component, sigma54 specific, transcriptional regulator, Fis family  34.75 
 
 
450 aa  71.2  0.000000000004  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010679  Bphyt_7251  response regulator receiver protein  31.9 
 
 
133 aa  71.2  0.000000000005  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5743  two component transcriptional regulator, LuxR family  39.5 
 
 
212 aa  70.9  0.000000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3729  two component LuxR family transcriptional regulator  38.6 
 
 
209 aa  70.9  0.000000000006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1685  two component transcriptional regulator, LuxR family  36.52 
 
 
215 aa  70.9  0.000000000006  Burkholderia phytofirmans PsJN  Bacteria  normal  0.166103  normal  0.907447 
 
 
-
 
NC_009523  RoseRS_2694  putative PAS/PAC sensor protein  35.65 
 
 
969 aa  70.9  0.000000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.0176534  normal 
 
 
-
 
NC_011071  Smal_2139  two component transcriptional regulator, LuxR family  37.17 
 
 
213 aa  70.5  0.000000000007  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3511  two component transcriptional regulator, LuxR family  37.17 
 
 
209 aa  70.5  0.000000000007  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4618  two component LuxR family transcriptional regulator  35.09 
 
 
224 aa  70.5  0.000000000008  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1267  response regulator receiver protein  34.55 
 
 
123 aa  70.1  0.000000000009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5187  two component transcriptional regulator, LuxR family  37.17 
 
 
230 aa  69.7  0.00000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.209149 
 
 
-
 
NC_007778  RPB_0181  two component LuxR family transcriptional regulator  40.71 
 
 
210 aa  69.7  0.00000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3192  two component transcriptional regulator, LuxR family  33.33 
 
 
212 aa  69.7  0.00000000001  Thauera sp. MZ1T  Bacteria  normal  0.513085  n/a   
 
 
-
 
NC_007964  Nham_0872  two component LuxR family transcriptional regulator  35.9 
 
 
210 aa  69.7  0.00000000001  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1194  two component LuxR family transcriptional regulator  33.04 
 
 
210 aa  70.1  0.00000000001  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00813352  normal  0.892025 
 
 
-
 
NC_008009  Acid345_0845  response regulator receiver protein  38.74 
 
 
183 aa  69.7  0.00000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2400  two component transcriptional regulator, LuxR family  39.82 
 
 
210 aa  68.9  0.00000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2249  two component LuxR family transcriptional regulator  38.18 
 
 
204 aa  69.3  0.00000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1699  response regulator receiver domain-containing protein  33.05 
 
 
124 aa  68.9  0.00000000002  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.000935694  normal 
 
 
-
 
NC_002947  PP_1401  two component, sigma54 specific, transcriptional regulator, Fis family  32.74 
 
 
444 aa  68.6  0.00000000003  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6901  response regulator receiver protein  35.29 
 
 
123 aa  68.6  0.00000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.279255  normal  0.546779 
 
 
-
 
NC_010557  BamMC406_6495  two component LuxR family transcriptional regulator  36.94 
 
 
214 aa  68.2  0.00000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  0.653682  normal 
 
 
-
 
NC_008392  Bamb_5742  two component LuxR family transcriptional regulator  36.94 
 
 
219 aa  68.2  0.00000000003  Burkholderia ambifaria AMMD  Bacteria  normal  0.505537  normal  0.963827 
 
 
-
 
NC_009767  Rcas_3177  adenylate/guanylate cyclase with GAF and PAS/PAC sensors  34.78 
 
 
971 aa  68.2  0.00000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00709  nodulation protein  34.23 
 
 
200 aa  68.2  0.00000000004  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  hitchhiker  0.00695869  n/a   
 
 
-
 
NC_007484  Noc_1701  two component LuxR family transcriptional regulator  30.83 
 
 
201 aa  68.2  0.00000000004  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0166117  n/a   
 
 
-
 
NC_009512  Pput_4322  two component, sigma54 specific, Fis family transcriptional regulator  33.04 
 
 
444 aa  68.2  0.00000000004  Pseudomonas putida F1  Bacteria  normal  0.713581  normal 
 
 
-
 
NC_008700  Sama_3183  response regulator receiver protein  32.5 
 
 
191 aa  67.8  0.00000000004  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1301  LuxR response regulator receiver  32.17 
 
 
210 aa  67.8  0.00000000005  Ralstonia eutropha JMP134  Bacteria  normal  0.549132  n/a   
 
 
-
 
NC_007492  Pfl01_5708  two component LuxR family transcriptional regulator  40.57 
 
 
221 aa  67.4  0.00000000006  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.306208 
 
 
-
 
NC_010515  Bcenmc03_5090  two component LuxR family transcriptional regulator  37.61 
 
 
214 aa  67.4  0.00000000006  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.159727  normal 
 
 
-
 
NC_008061  Bcen_3181  two component LuxR family transcriptional regulator  37.61 
 
 
214 aa  67.4  0.00000000006  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.246114  n/a   
 
 
-
 
NC_008321  Shewmr4_0637  two component LuxR family transcriptional regulator  33.04 
 
 
203 aa  67.4  0.00000000006  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.0000207768 
 
 
-
 
NC_008543  Bcen2424_5186  two component LuxR family transcriptional regulator  37.61 
 
 
214 aa  67.4  0.00000000006  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.0233056 
 
 
-
 
NC_008577  Shewana3_0637  two component LuxR family transcriptional regulator  33.04 
 
 
203 aa  67  0.00000000007  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.0000059529 
 
 
-
 
NC_008009  Acid345_3728  response regulator receiver protein  33.33 
 
 
117 aa  67  0.00000000007  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0582  two component LuxR family transcriptional regulator  38.52 
 
 
206 aa  67.4  0.00000000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.812865 
 
 
-
 
NC_012858  Rleg_6853  two component transcriptional regulator, LuxR family  31.45 
 
 
223 aa  67  0.00000000008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1328  histidine kinase  33.07 
 
 
672 aa  67  0.00000000008  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6678  two component transcriptional regulator, LuxR family  36.75 
 
 
207 aa  66.2  0.0000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc1597  response regulator transcription regulator protein  31.97 
 
 
210 aa  66.6  0.0000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  0.395881  normal 
 
 
-
 
NC_009719  Plav_2380  response regulator receiver protein  35.29 
 
 
208 aa  66.6  0.0000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1743  two component LuxR family transcriptional regulator  36.28 
 
 
209 aa  66.6  0.0000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.518394 
 
 
-
 
NC_008061  Bcen_3179  response regulator receiver protein  33.01 
 
 
132 aa  66.2  0.0000000001  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.00699153  n/a   
 
 
-
 
NC_008340  Mlg_0016  nitrogen metabolism transcriptional regulator NtrC  34.82 
 
 
468 aa  66.6  0.0000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0855054  normal  0.786337 
 
 
-
 
NC_008825  Mpe_A2130  two component LuxR family transcriptional regulator  33.63 
 
 
207 aa  65.9  0.0000000002  Methylibium petroleiphilum PM1  Bacteria  normal  0.281977  normal 
 
 
-
 
NC_009720  Xaut_3389  response regulator receiver protein  36.28 
 
 
211 aa  65.5  0.0000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2459  two component LuxR family transcriptional regulator  36.04 
 
 
215 aa  65.9  0.0000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A2884  two component LuxR family transcriptional regulator  35.14 
 
 
229 aa  65.9  0.0000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.538425 
 
 
-
 
NC_010515  Bcenmc03_5088  response regulator receiver protein  33.01 
 
 
124 aa  66.2  0.0000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5859  two-component response regulator NtrC  33.91 
 
 
476 aa  65.1  0.0000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  0.421071  n/a   
 
 
-
 
NC_009511  Swit_0268  two component LuxR family transcriptional regulator  31.86 
 
 
203 aa  65.5  0.0000000003  Sphingomonas wittichii RW1  Bacteria  normal  0.0126561  normal  0.200699 
 
 
-
 
NC_011757  Mchl_3285  two component, sigma54 specific, transcriptional regulator, Fis family  32.46 
 
 
450 aa  65.5  0.0000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0872  two component, sigma54 specific, Fis family transcriptional regulator  35.65 
 
 
471 aa  65.1  0.0000000003  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0650247 
 
 
-
 
NC_009621  Smed_5540  response regulator receiver protein  36.04 
 
 
226 aa  65.1  0.0000000003  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0494649 
 
 
-
 
NC_010682  Rpic_1949  two component transcriptional regulator, LuxR family  32.76 
 
 
211 aa  64.7  0.0000000004  Ralstonia pickettii 12J  Bacteria  normal  0.24135  normal  0.0521212 
 
 
-
 
NC_010551  BamMC406_2788  two component, sigma54 specific, Fis family transcriptional regulator  34.78 
 
 
451 aa  64.7  0.0000000004  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1621  two component transcriptional regulator, LuxR family  32.76 
 
 
211 aa  64.7  0.0000000004  Ralstonia pickettii 12D  Bacteria  normal  0.171805  normal 
 
 
-
 
NC_009997  Sbal195_3858  two component LuxR family transcriptional regulator  30 
 
 
206 aa  64.7  0.0000000004  Shewanella baltica OS195  Bacteria  normal  normal  0.0335499 
 
 
-
 
NC_008554  Sfum_0943  two component LuxR family transcriptional regulator  33.61 
 
 
214 aa  64.7  0.0000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_2926  two component, sigma54 specific, Fis family transcriptional regulator  34.78 
 
 
451 aa  64.7  0.0000000004  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2681  response regulator receiver protein  33.93 
 
 
121 aa  64.7  0.0000000005  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_012792  Vapar_6169  two component transcriptional regulator, LuxR family  34.21 
 
 
221 aa  64.3  0.0000000005  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3061  sigma-54 factor interaction domain-containing protein  32.46 
 
 
450 aa  64.3  0.0000000005  Methylobacterium extorquens PA1  Bacteria  normal  0.305462  normal 
 
 
-
 
NC_011126  HY04AAS1_1268  two component transcriptional regulator, winged helix family  26.79 
 
 
229 aa  63.9  0.0000000007  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_67680  two-component response regulator NtrC  33.04 
 
 
476 aa  63.9  0.0000000007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000437551  normal 
 
 
-
 
NC_007794  Saro_1616  two component LuxR family transcriptional regulator  30.17 
 
 
218 aa  63.5  0.0000000008  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2095  response regulator receiver protein  29.03 
 
 
216 aa  63.5  0.0000000008  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3812  two component LuxR family transcriptional regulator  35.48 
 
 
208 aa  63.5  0.0000000009  Dechloromonas aromatica RCB  Bacteria  normal  0.922787  normal  0.026414 
 
 
-
 
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