More than 300 homologs were found in PanDaTox collection
for query gene Rleg2_3999 on replicon NC_011369
Organism: Rhizobium leguminosarum bv. trifolii WSM2304



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011369  Rleg2_3999  transcriptional regulator, LuxR family  100 
 
 
260 aa  537  9.999999999999999e-153  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.0000000117104  normal 
 
 
-
 
NC_012850  Rleg_4328  transcriptional regulator, LuxR family  92.31 
 
 
260 aa  499  1e-140  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.00000000127099  normal  0.0225245 
 
 
-
 
NC_009636  Smed_2837  response regulator receiver protein  47.24 
 
 
262 aa  225  5.0000000000000005e-58  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00000311945  normal  0.812847 
 
 
-
 
NC_009620  Smed_4816  response regulator receiver protein  30.99 
 
 
248 aa  118  7.999999999999999e-26  Sinorhizobium medicae WSM419  Bacteria  normal  0.890736  normal  0.794324 
 
 
-
 
NC_012850  Rleg_0280  two component transcriptional regulator, LuxR family  26.23 
 
 
245 aa  84  0.000000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.417338  normal 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  28.44 
 
 
227 aa  81.6  0.00000000000001  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_011369  Rleg2_0250  two component transcriptional regulator, LuxR family  25.88 
 
 
260 aa  80.9  0.00000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.664516  normal 
 
 
-
 
NC_009665  Shew185_3713  two component LuxR family transcriptional regulator  40.19 
 
 
209 aa  74.7  0.000000000001  Shewanella baltica OS185  Bacteria  hitchhiker  0.000000000161759  n/a   
 
 
-
 
NC_009997  Sbal195_3836  two component LuxR family transcriptional regulator  40.19 
 
 
209 aa  74.7  0.000000000001  Shewanella baltica OS195  Bacteria  hitchhiker  0.00000136397  normal  0.0231387 
 
 
-
 
NC_009052  Sbal_0792  two component LuxR family transcriptional regulator  40.19 
 
 
209 aa  74.7  0.000000000001  Shewanella baltica OS155  Bacteria  hitchhiker  0.000000151034  n/a   
 
 
-
 
NC_009092  Shew_0842  two component LuxR family transcriptional regulator  30.98 
 
 
209 aa  73.9  0.000000000002  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00000336278  normal 
 
 
-
 
NC_011663  Sbal223_3654  two component transcriptional regulator, LuxR family  40.57 
 
 
209 aa  73.9  0.000000000002  Shewanella baltica OS223  Bacteria  unclonable  0.000000000464283  hitchhiker  0.00000781977 
 
 
-
 
NC_008321  Shewmr4_0657  two component LuxR family transcriptional regulator  40.57 
 
 
209 aa  73.6  0.000000000003  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000000493749  normal  0.229808 
 
 
-
 
NC_008322  Shewmr7_3365  two component LuxR family transcriptional regulator  40.57 
 
 
209 aa  73.6  0.000000000003  Shewanella sp. MR-7  Bacteria  hitchhiker  0.0000651556  normal  0.0242167 
 
 
-
 
NC_008577  Shewana3_0656  two component LuxR family transcriptional regulator  40.57 
 
 
209 aa  73.6  0.000000000003  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000000830399  normal  0.140804 
 
 
-
 
NC_009831  Ssed_0929  two component LuxR family transcriptional regulator  30.98 
 
 
209 aa  73.2  0.000000000004  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000567962  normal 
 
 
-
 
NC_010506  Swoo_0970  two component LuxR family transcriptional regulator  39.25 
 
 
209 aa  73.2  0.000000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0307407  normal 
 
 
-
 
NC_009438  Sputcn32_0683  two component LuxR family transcriptional regulator  50.79 
 
 
209 aa  72.4  0.000000000007  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000000388278  n/a   
 
 
-
 
NC_004347  SO_3982  DNA-binding nitrate/nitrite response regulator  49.21 
 
 
209 aa  71.6  0.00000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007964  Nham_3000  two component LuxR family transcriptional regulator  32.14 
 
 
263 aa  71.6  0.00000000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.42213  n/a   
 
 
-
 
NC_008700  Sama_0646  response regulator receiver protein  50 
 
 
209 aa  71.2  0.00000000002  Shewanella amazonensis SB2B  Bacteria  normal  0.0492071  normal 
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  30.51 
 
 
230 aa  71.2  0.00000000002  Sinorhizobium medicae WSM419  Bacteria  normal  decreased coverage  0.00554548 
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  51.52 
 
 
217 aa  70.5  0.00000000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  28.21 
 
 
216 aa  70.1  0.00000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.192356 
 
 
-
 
NC_008345  Sfri_0620  two component transcriptional regulator, LuxR family protein  51.67 
 
 
209 aa  70.1  0.00000000004  Shewanella frigidimarina NCIMB 400  Bacteria  unclonable  0.000000000275655  n/a   
 
 
-
 
NC_009668  Oant_3972  two component LuxR family transcriptional regulator  26.36 
 
 
251 aa  69.7  0.00000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.111106  n/a   
 
 
-
 
NC_009901  Spea_0829  two component LuxR family transcriptional regulator  45.31 
 
 
209 aa  69.3  0.00000000005  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00236991  n/a   
 
 
-
 
NC_011149  SeAg_B3813  putative transcriptional regulator  24.2 
 
 
200 aa  69.3  0.00000000006  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A3800  putative transcriptional regulator  24.2 
 
 
200 aa  69.3  0.00000000006  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  27.6 
 
 
215 aa  69.3  0.00000000006  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A3981  putative transcriptional regulator  24.2 
 
 
200 aa  69.3  0.00000000006  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.347336 
 
 
-
 
NC_011083  SeHA_C3921  putative transcriptional regulator  24.2 
 
 
200 aa  69.3  0.00000000006  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0978  two component LuxR family transcriptional regulator  27.5 
 
 
247 aa  68.6  0.00000000009  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.159022  normal 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  31.11 
 
 
209 aa  68.2  0.0000000001  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2943  two component LuxR family transcriptional regulator  25.4 
 
 
351 aa  68.2  0.0000000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.692808  n/a   
 
 
-
 
NC_009667  Oant_0267  two component LuxR family transcriptional regulator  27.54 
 
 
241 aa  68.6  0.0000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  28.51 
 
 
221 aa  68.2  0.0000000001  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  29.86 
 
 
219 aa  67.4  0.0000000002  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  28.38 
 
 
221 aa  67.4  0.0000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2574  two component LuxR family transcriptional regulator  27.05 
 
 
253 aa  67.8  0.0000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  28.02 
 
 
218 aa  67.4  0.0000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A3878  putative transcriptional regulator  24.2 
 
 
200 aa  67.8  0.0000000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1961  response regulator receiver protein  26.97 
 
 
247 aa  67.4  0.0000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1848  transcriptional regulator NarL  45.74 
 
 
215 aa  67  0.0000000003  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  43.94 
 
 
211 aa  67  0.0000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  45.98 
 
 
208 aa  67  0.0000000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  24.66 
 
 
209 aa  66.6  0.0000000004  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_007493  RSP_0316  LuxR family transcriptional regulator  49.25 
 
 
213 aa  66.6  0.0000000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.155222  n/a   
 
 
-
 
NC_007651  BTH_I1094  DNA-binding response regulator  31.45 
 
 
279 aa  66.6  0.0000000004  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000582737  n/a   
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  27.23 
 
 
216 aa  66.6  0.0000000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal 
 
 
-
 
NC_013889  TK90_1248  transcriptional regulator, LuxR family  26.15 
 
 
232 aa  66.2  0.0000000005  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4608  two component LuxR family transcriptional regulator  34.43 
 
 
275 aa  66.2  0.0000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.313635  normal 
 
 
-
 
NC_011312  VSAL_I2370  nitrate/nitrite response regulator protein NarP  48.39 
 
 
203 aa  65.5  0.0000000008  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  25.79 
 
 
239 aa  65.5  0.0000000008  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4863  two component transcriptional regulator, LuxR family  38.61 
 
 
263 aa  65.5  0.0000000008  Methylobacterium populi BJ001  Bacteria  normal  0.937693  normal  0.105083 
 
 
-
 
NC_012880  Dd703_1766  transcriptional regulator NarL  52.46 
 
 
216 aa  65.5  0.0000000009  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  27.46 
 
 
216 aa  65.5  0.0000000009  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000136895 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  27.46 
 
 
216 aa  64.7  0.000000001  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  27.46 
 
 
216 aa  64.7  0.000000001  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  32.74 
 
 
224 aa  65.1  0.000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_03610  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  51.92 
 
 
470 aa  64.7  0.000000001  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.166414  normal  0.0491532 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  27.44 
 
 
220 aa  65.1  0.000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3579  regulatory protein LuxR  38.71 
 
 
213 aa  64.7  0.000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.0227422  normal 
 
 
-
 
NC_008254  Meso_2457  LuxR family transcriptional regulator  42.67 
 
 
554 aa  64.7  0.000000001  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3710  LuxR family transcriptional regulator  54.9 
 
 
426 aa  65.1  0.000000001  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_0180  two component transcriptional regulator, LuxR family  37.36 
 
 
216 aa  64.7  0.000000001  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.245465  n/a   
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  27.46 
 
 
216 aa  64.3  0.000000002  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.00000000317123 
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  26.46 
 
 
215 aa  64.7  0.000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4715  two component transcriptional regulator, LuxR family  38.61 
 
 
253 aa  64.7  0.000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.525745 
 
 
-
 
NC_009484  Acry_1738  response regulator receiver protein  26.67 
 
 
267 aa  64.3  0.000000002  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0042  nitrate/nitrite response regulator protein  48.44 
 
 
209 aa  63.9  0.000000002  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4346  regulatory protein LuxR  38.61 
 
 
253 aa  64.7  0.000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5384  two component response regulator  32.17 
 
 
216 aa  64.3  0.000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3368  two component LuxR family transcriptional regulator  31.97 
 
 
258 aa  63.5  0.000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0298943  n/a   
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  46.77 
 
 
219 aa  63.5  0.000000003  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0211  two component LuxR family transcriptional regulator  27.5 
 
 
227 aa  63.9  0.000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.196171  normal  0.645513 
 
 
-
 
NC_009620  Smed_4801  two component LuxR family transcriptional regulator  30.3 
 
 
259 aa  63.5  0.000000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.433912  normal 
 
 
-
 
NC_009620  Smed_4826  two component LuxR family transcriptional regulator  31.62 
 
 
267 aa  63.5  0.000000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.847801  normal  0.0520322 
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  30.38 
 
 
216 aa  63.5  0.000000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01507  putative transcriptional regulator, LuxR family protein  33.6 
 
 
159 aa  63.5  0.000000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.993499  n/a   
 
 
-
 
NC_002936  DET0432  LuxR family DNA-binding response regulator  31.28 
 
 
232 aa  63.2  0.000000004  Dehalococcoides ethenogenes 195  Bacteria  hitchhiker  0.00543066  n/a   
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  26.46 
 
 
215 aa  63.2  0.000000004  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1148  regulatory protein LuxR  39.36 
 
 
921 aa  63.2  0.000000004  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.108504  normal 
 
 
-
 
NC_009430  Rsph17025_4078  hypothetical protein  35.25 
 
 
243 aa  63.2  0.000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0439982  normal  0.0668702 
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  29.02 
 
 
210 aa  63.2  0.000000004  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2786  two component LuxR family transcriptional regulator  44.78 
 
 
210 aa  62.8  0.000000005  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0443035  normal  0.922606 
 
 
-
 
NC_007511  Bcep18194_B1210  ATP-dependent transcription regulator LuxR  38.24 
 
 
889 aa  63.2  0.000000005  Burkholderia sp. 383  Bacteria  normal  0.603589  normal 
 
 
-
 
NC_009832  Spro_3490  two component LuxR family transcriptional regulator  42.65 
 
 
210 aa  63.2  0.000000005  Serratia proteamaculans 568  Bacteria  normal  0.0559776  normal 
 
 
-
 
NC_004347  SO_3305  LuxR family DNA-binding response regulator  26.85 
 
 
206 aa  62.8  0.000000006  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  47.69 
 
 
242 aa  62.8  0.000000006  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_013739  Cwoe_4359  transcriptional regulator, LuxR family  45 
 
 
302 aa  62.8  0.000000006  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1932  two component LuxR family transcriptional regulator  38.27 
 
 
236 aa  62.4  0.000000007  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1153  LuxR family transcriptional regulator  50 
 
 
243 aa  62.4  0.000000007  Jannaschia sp. CCS1  Bacteria  normal  normal  0.446836 
 
 
-
 
NC_007951  Bxe_A3567  ATP-dependent transcription regulator LuxR  47.46 
 
 
251 aa  62.4  0.000000007  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_2341  transcriptional regulator NarP  45.45 
 
 
215 aa  62.4  0.000000007  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.277554 
 
 
-
 
NC_009800  EcHS_A2331  transcriptional regulator NarP  45.45 
 
 
215 aa  62.4  0.000000007  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  27.85 
 
 
218 aa  62.4  0.000000007  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1457  transcriptional regulator NarP  45.45 
 
 
215 aa  62.4  0.000000007  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.956805 
 
 
-
 
NC_009074  BURPS668_1325  putative DNA-binding response regulator  29.25 
 
 
279 aa  62.4  0.000000007  Burkholderia pseudomallei 668  Bacteria  normal  0.0852238  n/a   
 
 
-
 
NC_010658  SbBS512_E0748  transcriptional regulator NarP  45.45 
 
 
215 aa  62.4  0.000000007  Shigella boydii CDC 3083-94  Bacteria  normal  0.251733  n/a   
 
 
-
 
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