More than 300 homologs were found in PanDaTox collection
for query gene PP_2126 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_002947  PP_2126  LuxR family DNA-binding response regulator  100 
 
 		 219 aa  435  1e-121  Pseudomonas putida KT2440  Bacteria  normal  0.118459  normal  0.107719 
 
 
-
 
NC_009512  Pput_3615  two component LuxR family transcriptional regulator  99.54 
 
 		 219 aa  432  1e-120  Pseudomonas putida F1  Bacteria  normal  0.378192  normal  0.274637 
 
 
-
 
NC_010322  PputGB1_1667  two component LuxR family transcriptional regulator  95.43 
 
 		 219 aa  420  1e-117  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.869411 
 
 
-
 
NC_010501  PputW619_1643  two component LuxR family transcriptional regulator  87.67 
 
 		 219 aa  377  1e-104  Pseudomonas putida W619  Bacteria  normal  0.118638  normal  1 
 
 
-
 
NC_007492  Pfl01_3957  two component LuxR family transcriptional regulator  78.54 
 
 		 219 aa  340  9e-93  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007005  Psyr_3299  LuxR response regulator receiver  71.82 
 
 		 220 aa  306  1.0000000000000001e-82  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0158345  normal  1 
 
 
-
 
NC_004578  PSPTO_3526  DNA-binding response regulator, LuxR family  74.55 
 
 		 220 aa  305  3e-82  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0134281  n/a   
 
 
-
 
NC_009439  Pmen_1563  two component LuxR family transcriptional regulator  63.47 
 
 		 214 aa  266  2e-70  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  0.241819 
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  48.84 
 
 		 219 aa  199  3e-50  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.0121621 
 
 
-
 
NC_008700  Sama_1873  response regulator receiver protein  47.39 
 
 		 215 aa  184  1.0000000000000001e-45  Shewanella amazonensis SB2B  Bacteria  normal  0.56104  normal  1 
 
 
-
 
NC_008255  CHU_1317  response regulator  39.63 
 
 		 220 aa  177  1e-43  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_007298  Daro_2343  two component LuxR family transcriptional regulator  42.92 
 
 		 211 aa  176  2e-43  Dechloromonas aromatica RCB  Bacteria  normal  0.999882  normal  0.0841394 
 
 
-
 
NC_011662  Tmz1t_1311  two component transcriptional regulator, LuxR family  47.22 
 
 		 226 aa  176  3e-43  Thauera sp. MZ1T  Bacteria  normal  0.165019  n/a   
 
 
-
 
NC_007908  Rfer_0894  two component LuxR family transcriptional regulator  46.51 
 
 		 217 aa  175  4e-43  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  41.28 
 
 		 216 aa  167  9e-41  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_0700  two component transcriptional regulator, LuxR family  38.99 
 
 		 218 aa  167  1e-40  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00980919  normal  0.316207 
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  42.72 
 
 		 215 aa  165  4e-40  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  39.09 
 
 		 218 aa  164  8e-40  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  39.09 
 
 		 218 aa  164  8e-40  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  39.09 
 
 		 218 aa  164  1.0000000000000001e-39  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  38.86 
 
 		 215 aa  164  1.0000000000000001e-39  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  38.71 
 
 		 218 aa  163  2.0000000000000002e-39  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009901  Spea_2299  two component LuxR family transcriptional regulator  40.93 
 
 		 221 aa  162  5.0000000000000005e-39  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  39.81 
 
 		 218 aa  158  6e-38  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  39.07 
 
 		 216 aa  157  1e-37  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  41.23 
 
 		 213 aa  157  1e-37  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  38.43 
 
 		 218 aa  156  2e-37  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal  1 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  40.09 
 
 		 213 aa  155  3e-37  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU3229  LuxR family DNA-binding response regulator  37.79 
 
 		 229 aa  155  5.0000000000000005e-37  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU0682  LuxR family DNA-binding response regulator  40.65 
 
 		 215 aa  154  9e-37  Geobacter sulfurreducens PCA  Bacteria  normal  0.874366  n/a   
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  40.38 
 
 		 208 aa  154  9e-37  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  0.0637899 
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  37.61 
 
 		 216 aa  154  1e-36  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  40.76 
 
 		 214 aa  154  1e-36  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_003910  CPS_1406  DNA-binding response regulator  37.32 
 
 		 215 aa  152  2.9999999999999998e-36  Colwellia psychrerythraea 34H  Bacteria  normal  0.253896  n/a   
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  37.33 
 
 		 216 aa  152  2.9999999999999998e-36  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  37.73 
 
 		 236 aa  152  2.9999999999999998e-36  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  35.38 
 
 		 217 aa  152  5e-36  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  34.98 
 
 		 242 aa  151  5.9999999999999996e-36  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  36.57 
 
 		 253 aa  151  5.9999999999999996e-36  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  38.89 
 
 		 214 aa  151  7e-36  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  40.09 
 
 		 221 aa  151  8.999999999999999e-36  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  37.9 
 
 		 226 aa  150  2e-35  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_2290  two component LuxR family transcriptional regulator  38.65 
 
 		 215 aa  150  2e-35  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  36.1 
 
 		 219 aa  147  9e-35  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  38.03 
 
 		 212 aa  147  1.0000000000000001e-34  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  36.32 
 
 		 213 aa  147  1.0000000000000001e-34  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  40 
 
 		 214 aa  147  2.0000000000000003e-34  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal  1 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  36.67 
 
 		 212 aa  145  4.0000000000000006e-34  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  35.43 
 
 		 224 aa  145  5e-34  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011071  Smal_1888  two component transcriptional regulator, LuxR family  39.91 
 
 		 212 aa  145  6e-34  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  0.265772 
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  33.33 
 
 		 213 aa  145  7.0000000000000006e-34  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_010717  PXO_00996  response regulator  43.27 
 
 		 210 aa  145  7.0000000000000006e-34  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0885199  n/a   
 
 
-
 
NC_010717  PXO_06170  response regulator  43.27 
 
 		 210 aa  145  7.0000000000000006e-34  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.624626  n/a   
 
 
-
 
NC_008752  Aave_4229  two component LuxR family transcriptional regulator  42.58 
 
 		 219 aa  145  7.0000000000000006e-34  Acidovorax citrulli AAC00-1  Bacteria  normal  0.720334  normal  0.28913 
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  39.23 
 
 		 214 aa  144  1e-33  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007517  Gmet_2158  two component LuxR family transcriptional regulator  33.95 
 
 		 210 aa  143  2e-33  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  0.0301144 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  35.35 
 
 		 241 aa  143  2e-33  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.858367 
 
 
-
 
NC_008228  Patl_2450  two component LuxR family transcriptional regulator  35.65 
 
 		 214 aa  143  2e-33  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00539256  n/a   
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  36.53 
 
 		 218 aa  143  2e-33  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  39.13 
 
 		 214 aa  142  3e-33  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  39.15 
 
 		 215 aa  142  3e-33  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_5409  two component transcriptional regulator, LuxR family  34.23 
 
 		 223 aa  140  9.999999999999999e-33  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00220575  normal  1 
 
 
-
 
NC_009079  BMA10247_A2364  LuxR family DNA-binding response regulator  38.68 
 
 		 215 aa  140  9.999999999999999e-33  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_006349  BMAA2071  LuxR family DNA-binding response regulator  38.68 
 
 		 215 aa  140  9.999999999999999e-33  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_008784  BMASAVP1_1100  LuxR family DNA-binding response regulator  38.68 
 
 		 215 aa  140  9.999999999999999e-33  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1463  LuxR family DNA-binding response regulator  38.68 
 
 		 215 aa  140  9.999999999999999e-33  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_009075  BURPS668_A3248  LuxR family DNA-binding response regulator  38.68 
 
 		 215 aa  141  9.999999999999999e-33  Burkholderia pseudomallei 668  Bacteria  normal  0.780539  n/a   
 
 
-
 
NC_008009  Acid345_4067  two component LuxR family transcriptional regulator  37.67 
 
 		 233 aa  140  9.999999999999999e-33  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.836498  normal  0.141664 
 
 
-
 
NC_008835  BMA10229_1379  LuxR family DNA-binding response regulator  38.68 
 
 		 215 aa  140  9.999999999999999e-33  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_007347  Reut_A1216  two component LuxR family transcriptional regulator  36.32 
 
 		 215 aa  140  1.9999999999999998e-32  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007650  BTH_II2335  LuxR family DNA-binding response regulator  38.68 
 
 		 215 aa  140  1.9999999999999998e-32  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_3992  two component transcriptional regulator, LuxR family  40.76 
 
 		 214 aa  140  1.9999999999999998e-32  Variovorax paradoxus S110  Bacteria  normal  0.82671  n/a   
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  33.95 
 
 		 217 aa  140  1.9999999999999998e-32  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  33.18 
 
 		 234 aa  139  1.9999999999999998e-32  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.336237 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  37.32 
 
 		 206 aa  139  1.9999999999999998e-32  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  37.16 
 
 		 213 aa  140  1.9999999999999998e-32  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  34.26 
 
 		 223 aa  139  3e-32  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_010002  Daci_5322  two component LuxR family transcriptional regulator  38.46 
 
 		 220 aa  139  3e-32  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.929677 
 
 
-
 
NC_013510  Tcur_0154  two component transcriptional regulator, LuxR family  38.81 
 
 		 244 aa  139  3.9999999999999997e-32  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_3239  two component LuxR family transcriptional regulator  36.36 
 
 		 274 aa  139  3.9999999999999997e-32  Opitutus terrae PB90-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013037  Dfer_2055  two component transcriptional regulator, LuxR family  32.73 
 
 		 220 aa  139  4.999999999999999e-32  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011658  BCAH187_A2375  DNA-binding response regulator, LuxR family  35.07 
 
 		 209 aa  138  4.999999999999999e-32  Bacillus cereus AH187  Bacteria  normal  0.248491  n/a   
 
 
-
 
NC_007511  Bcep18194_B2520  two component LuxR family transcriptional regulator  36.19 
 
 		 214 aa  138  4.999999999999999e-32  Burkholderia sp. 383  Bacteria  normal  0.943169  normal  0.310419 
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  35.05 
 
 		 216 aa  139  4.999999999999999e-32  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010625  Bphy_7047  two component LuxR family transcriptional regulator  33.49 
 
 		 215 aa  137  8.999999999999999e-32  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.976007 
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  34.1 
 
 		 237 aa  137  8.999999999999999e-32  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_003295  RSc2312  two-component response regulator transcription regulator protein  35.27 
 
 		 238 aa  137  1e-31  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  0.500036 
 
 
-
 
NC_003909  BCE_2293  LuxR family DNA-binding response regulator  33.49 
 
 		 211 aa  137  1e-31  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  36.11 
 
 		 216 aa  137  1e-31  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_005945  BAS2109  LuxR family DNA-binding response regulator  34.6 
 
 		 209 aa  137  1e-31  Bacillus anthracis str. Sterne  Bacteria  normal  1  n/a   
 
 
-
 
NC_005957  BT9727_2048  response regulator  34.6 
 
 		 209 aa  137  1e-31  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.102554  n/a   
 
 
-
 
NC_006274  BCZK2046  response regulator  34.6 
 
 		 209 aa  137  1e-31  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_007530  GBAA_2265  LuxR family DNA-binding response regulator  34.6 
 
 		 209 aa  137  1e-31  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.201191  n/a   
 
 
-
 
NC_011773  BCAH820_2290  DNA-binding response regulator, LuxR family  34.6 
 
 		 209 aa  137  1e-31  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000736213 
 
 
-
 
NC_010717  PXO_04459  two-component system regulatory protein  37.67 
 
 		 213 aa  136  2e-31  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010676  Bphyt_5584  two component transcriptional regulator, LuxR family  33.64 
 
 		 215 aa  137  2e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  0.282667  normal  1 
 
 
-
 
NC_007974  Rmet_4715  Two component LuxR family transcriptional regulator  33.02 
 
 		 264 aa  136  2e-31  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  37.21 
 
 		 214 aa  137  2e-31  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_013131  Caci_5202  two component transcriptional regulator, LuxR family  37.21 
 
 		 225 aa  136  2e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.677169  normal  0.920773 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  38.03 
 
 		 222 aa  137  2e-31  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal  1 
 
 
-
 
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