Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_4067 |
Symbol | |
ID | 4072489 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | - |
Start bp | 4812037 |
End bp | 4812738 |
Gene Length | 702 bp |
Protein Length | 233 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637986098 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_593141 |
Protein GI | 94971093 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.836498 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.141664 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTTCCA ACCTGCCCGG TACAGGCCCC TACGACGACC TTTCCCTCGA GGAGATCCGG ATGAACCGCA CCCGAATACT TTTGGCTGAT GACCACAATC TGGTGGCAGA ACTCTGCAAG AAACTTCTCG AAACGGAATA CGAAGTTGTA GGCATTGCAA CCGATGGCAG GGCTTTGGTG CGCGCGGCCG TGGAACTGAA GCCAGATGTC ATCATTGCCG ACGTCGGCAT GCCGCTACTC AATGGCCTTG ACGCGGCACA ACAGGTCAAG CAGAAGCTGC CGACGGTCAA GATCATATTT CTGACAATGA ATCCGGATCC GGATATCGCC GCCGAAGCGT TTCGGCGTGG CGCTTCCGCC TACCTTGTGA AGACATCAGC CGCCTCGGAG GTAGTCGCCT CGGTACGCGA GGTCCTCCGC GGTAAAACCT ACGTTTCGCC TACGATTCCG CGGGAAATGA TTGATCTTTC GCTCTGGCAG CACAAGAAGC TTGTGGACGA AACCCATAAG CTCACGGACC GGCAGCGCGA GGTACTACAA CTGCTCGCAG AAGGTAAGGG GATGAAGGAA GTTGCGGCGA TCCTCAACAT GACTACGCGT ACGGTTGCGT TCCACAAGTA CCGCATCATG GAAGTTCTTG GCACGAAGAA CAACGCCGAT CTCGTGAAAT ACGCAGTTCG CAACCGCATG ACGAGCCTCT GA
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Protein sequence | MGSNLPGTGP YDDLSLEEIR MNRTRILLAD DHNLVAELCK KLLETEYEVV GIATDGRALV RAAVELKPDV IIADVGMPLL NGLDAAQQVK QKLPTVKIIF LTMNPDPDIA AEAFRRGASA YLVKTSAASE VVASVREVLR GKTYVSPTIP REMIDLSLWQ HKKLVDETHK LTDRQREVLQ LLAEGKGMKE VAAILNMTTR TVAFHKYRIM EVLGTKNNAD LVKYAVRNRM TSL
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