Gene Acid345_4067 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAcid345_4067 
Symbol 
ID4072489 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Koribacter versatilis Ellin345 
KingdomBacteria 
Replicon accessionNC_008009 
Strand
Start bp4812037 
End bp4812738 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content56% 
IMG OID637986098 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_593141 
Protein GI94971093 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.836498 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.141664 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTTCCA ACCTGCCCGG TACAGGCCCC TACGACGACC TTTCCCTCGA GGAGATCCGG 
ATGAACCGCA CCCGAATACT TTTGGCTGAT GACCACAATC TGGTGGCAGA ACTCTGCAAG
AAACTTCTCG AAACGGAATA CGAAGTTGTA GGCATTGCAA CCGATGGCAG GGCTTTGGTG
CGCGCGGCCG TGGAACTGAA GCCAGATGTC ATCATTGCCG ACGTCGGCAT GCCGCTACTC
AATGGCCTTG ACGCGGCACA ACAGGTCAAG CAGAAGCTGC CGACGGTCAA GATCATATTT
CTGACAATGA ATCCGGATCC GGATATCGCC GCCGAAGCGT TTCGGCGTGG CGCTTCCGCC
TACCTTGTGA AGACATCAGC CGCCTCGGAG GTAGTCGCCT CGGTACGCGA GGTCCTCCGC
GGTAAAACCT ACGTTTCGCC TACGATTCCG CGGGAAATGA TTGATCTTTC GCTCTGGCAG
CACAAGAAGC TTGTGGACGA AACCCATAAG CTCACGGACC GGCAGCGCGA GGTACTACAA
CTGCTCGCAG AAGGTAAGGG GATGAAGGAA GTTGCGGCGA TCCTCAACAT GACTACGCGT
ACGGTTGCGT TCCACAAGTA CCGCATCATG GAAGTTCTTG GCACGAAGAA CAACGCCGAT
CTCGTGAAAT ACGCAGTTCG CAACCGCATG ACGAGCCTCT GA
 
Protein sequence
MGSNLPGTGP YDDLSLEEIR MNRTRILLAD DHNLVAELCK KLLETEYEVV GIATDGRALV 
RAAVELKPDV IIADVGMPLL NGLDAAQQVK QKLPTVKIIF LTMNPDPDIA AEAFRRGASA
YLVKTSAASE VVASVREVLR GKTYVSPTIP REMIDLSLWQ HKKLVDETHK LTDRQREVLQ
LLAEGKGMKE VAAILNMTTR TVAFHKYRIM EVLGTKNNAD LVKYAVRNRM TSL