More than 300 homologs were found in PanDaTox collection
for query gene Lcho_1600 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_1600  methyl-accepting chemotaxis sensory transducer  100 
 
 
594 aa  1184    Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.00034667 
 
 
-
 
NC_008752  Aave_0035  methyl-accepting chemotaxis sensory transducer  50.85 
 
 
558 aa  465  9.999999999999999e-131  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2354  methyl-accepting chemotaxis sensory transducer  49 
 
 
554 aa  441  9.999999999999999e-123  Rhodoferax ferrireducens T118  Bacteria  normal  0.547249  n/a   
 
 
-
 
NC_010002  Daci_0036  methyl-accepting chemotaxis sensory transducer  48.65 
 
 
567 aa  429  1e-119  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0020  methyl-accepting chemotaxis sensory transducer  49.35 
 
 
550 aa  413  1e-114  Acidovorax sp. JS42  Bacteria  normal  normal  0.857372 
 
 
-
 
NC_011992  Dtpsy_0038  methyl-accepting chemotaxis sensory transducer  49.45 
 
 
550 aa  414  1e-114  Acidovorax ebreus TPSY  Bacteria  normal  0.398829  n/a   
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  60.61 
 
 
584 aa  409  1e-113  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  52.81 
 
 
589 aa  389  1e-107  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
NC_011992  Dtpsy_2969  methyl-accepting chemotaxis sensory transducer  46.21 
 
 
550 aa  382  1e-105  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3659  methyl-accepting chemotaxis sensory transducer  46.05 
 
 
550 aa  384  1e-105  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0931  methyl-accepting chemotaxis sensory transducer  56.22 
 
 
591 aa  376  1e-103  Acidovorax ebreus TPSY  Bacteria  normal  0.269909  n/a   
 
 
-
 
NC_008752  Aave_0831  methyl-accepting chemotaxis sensory transducer  41.48 
 
 
561 aa  375  1e-102  Acidovorax citrulli AAC00-1  Bacteria  normal  0.236088  normal  0.180731 
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  53.45 
 
 
578 aa  363  4e-99  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_008782  Ajs_1017  methyl-accepting chemotaxis sensory transducer  65.35 
 
 
591 aa  362  8e-99  Acidovorax sp. JS42  Bacteria  normal  0.696887  normal 
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  55.42 
 
 
572 aa  362  9e-99  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_011992  Dtpsy_2974  methyl-accepting chemotaxis sensory transducer with Cache sensor  56.2 
 
 
579 aa  361  2e-98  Acidovorax ebreus TPSY  Bacteria  hitchhiker  0.00885268  n/a   
 
 
-
 
NC_008782  Ajs_3664  methyl-accepting chemotaxis sensory transducer  56.45 
 
 
598 aa  358  9.999999999999999e-98  Acidovorax sp. JS42  Bacteria  normal  0.197645  normal 
 
 
-
 
NC_011992  Dtpsy_3481  methyl-accepting chemotaxis sensory transducer  59.6 
 
 
674 aa  358  1.9999999999999998e-97  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_4123  methyl-accepting chemotaxis sensory transducer  59.6 
 
 
674 aa  357  2.9999999999999997e-97  Acidovorax sp. JS42  Bacteria  normal  0.162807  normal  0.87643 
 
 
-
 
NC_007908  Rfer_3119  methyl-accepting chemotaxis sensory transducer  65.12 
 
 
554 aa  357  2.9999999999999997e-97  Rhodoferax ferrireducens T118  Bacteria  normal  0.813886  n/a   
 
 
-
 
NC_008786  Veis_0400  methyl-accepting chemotaxis sensory transducer  52.07 
 
 
602 aa  357  2.9999999999999997e-97  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0817302 
 
 
-
 
NC_012791  Vapar_4189  methyl-accepting chemotaxis sensory transducer  55.75 
 
 
559 aa  350  4e-95  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2663  methyl-accepting chemotaxis sensory transducer  61.97 
 
 
520 aa  350  5e-95  Methylibium petroleiphilum PM1  Bacteria  normal  0.0198398  normal 
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  53.2 
 
 
579 aa  349  9e-95  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010002  Daci_5410  methyl-accepting chemotaxis sensory transducer  52.47 
 
 
635 aa  348  1e-94  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1601  methyl-accepting chemotaxis sensory transducer  66.78 
 
 
490 aa  348  1e-94  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000628162 
 
 
-
 
NC_008752  Aave_0104  methyl-accepting chemotaxis sensory transducer  62.79 
 
 
622 aa  347  3e-94  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A0121  methyl-accepting chemotaxis sensory transducer  55.81 
 
 
618 aa  346  6e-94  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.487659 
 
 
-
 
NC_008752  Aave_1344  methyl-accepting chemotaxis sensory transducer  63.91 
 
 
536 aa  346  6e-94  Acidovorax citrulli AAC00-1  Bacteria  normal  0.129873  normal  0.199885 
 
 
-
 
NC_011992  Dtpsy_2762  methyl-accepting chemotaxis sensory transducer  57.18 
 
 
584 aa  345  1e-93  Acidovorax ebreus TPSY  Bacteria  normal  0.636912  n/a   
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  46.88 
 
 
559 aa  344  2e-93  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_008782  Ajs_2152  methyl-accepting chemotaxis sensory transducer  45.59 
 
 
589 aa  345  2e-93  Acidovorax sp. JS42  Bacteria  normal  normal  0.0117525 
 
 
-
 
NC_008782  Ajs_3430  methyl-accepting chemotaxis sensory transducer  55.58 
 
 
584 aa  345  2e-93  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  55.9 
 
 
580 aa  343  4e-93  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3609  methyl-accepting chemotaxis sensory transducer  49.76 
 
 
596 aa  343  5.999999999999999e-93  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3087  methyl-accepting chemotaxis sensory transducer  54.37 
 
 
527 aa  340  4e-92  Acidovorax sp. JS42  Bacteria  normal  normal  0.823637 
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  43.74 
 
 
542 aa  340  4e-92  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  51.08 
 
 
583 aa  337  3.9999999999999995e-91  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_008825  Mpe_A0335  methyl-accepting chemotaxis protein I  62.33 
 
 
394 aa  337  3.9999999999999995e-91  Methylibium petroleiphilum PM1  Bacteria  normal  0.809135  normal  0.684623 
 
 
-
 
NC_010002  Daci_5082  methyl-accepting chemotaxis sensory transducer  57.5 
 
 
589 aa  336  5.999999999999999e-91  Delftia acidovorans SPH-1  Bacteria  normal  0.678642  normal  0.0204532 
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  52.77 
 
 
569 aa  336  7e-91  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1619  chemotaxis sensory transducer  56.59 
 
 
559 aa  336  9e-91  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.940607  normal  0.203143 
 
 
-
 
NC_008752  Aave_1956  methyl-accepting chemotaxis sensory transducer  52.25 
 
 
598 aa  334  2e-90  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0136938 
 
 
-
 
NC_007908  Rfer_2481  methyl-accepting chemotaxis sensory transducer  43.27 
 
 
579 aa  334  3e-90  Rhodoferax ferrireducens T118  Bacteria  normal  0.37743  n/a   
 
 
-
 
NC_010681  Bphyt_3813  methyl-accepting chemotaxis sensory transducer  49.66 
 
 
617 aa  334  3e-90  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  54.1 
 
 
589 aa  333  5e-90  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3485  methyl-accepting chemotaxis sensory transducer  56.56 
 
 
573 aa  332  8e-90  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000328178 
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  59.05 
 
 
586 aa  332  1e-89  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_008752  Aave_4294  methyl-accepting chemotaxis sensory transducer  56.32 
 
 
539 aa  332  1e-89  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  57.5 
 
 
537 aa  329  7e-89  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_012791  Vapar_4186  methyl-accepting chemotaxis sensory transducer  58.1 
 
 
577 aa  329  8e-89  Variovorax paradoxus S110  Bacteria  normal  0.494266  n/a   
 
 
-
 
NC_007947  Mfla_1933  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  47.93 
 
 
598 aa  329  9e-89  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2088  methyl-accepting chemotaxis sensory transducer with Cache sensor  60.55 
 
 
617 aa  328  1.0000000000000001e-88  Acidovorax ebreus TPSY  Bacteria  normal  0.258516  n/a   
 
 
-
 
NC_008825  Mpe_A0750  methyl-accepting chemotaxis sensory transducer  45.11 
 
 
592 aa  328  2.0000000000000001e-88  Methylibium petroleiphilum PM1  Bacteria  normal  0.318431  normal  0.0335504 
 
 
-
 
NC_008752  Aave_3880  methyl-accepting chemotaxis sensory transducer  53.44 
 
 
557 aa  327  3e-88  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0925  methyl-accepting chemotaxis sensory transducer  42.07 
 
 
552 aa  327  4.0000000000000003e-88  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3266  methyl-accepting chemotaxis sensory transducer  54.4 
 
 
650 aa  325  1e-87  Delftia acidovorans SPH-1  Bacteria  normal  0.50478  hitchhiker  0.0000385615 
 
 
-
 
NC_008752  Aave_1960  methyl-accepting chemotaxis sensory transducer  60.91 
 
 
642 aa  325  2e-87  Acidovorax citrulli AAC00-1  Bacteria  normal  0.741418  normal  0.0148687 
 
 
-
 
NC_010524  Lcho_2363  methyl-accepting chemotaxis sensory transducer  60.91 
 
 
512 aa  324  3e-87  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007974  Rmet_5612  methyl-accepting chemotaxis protein II  55.06 
 
 
513 aa  324  3e-87  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  54.82 
 
 
566 aa  324  3e-87  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_010622  Bphy_2972  methyl-accepting chemotaxis sensory transducer  62.87 
 
 
597 aa  323  4e-87  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.00113075 
 
 
-
 
NC_008752  Aave_0428  methyl-accepting chemotaxis sensory transducer  59.02 
 
 
597 aa  323  4e-87  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5597  methyl-accepting chemotaxis sensory transducer  50.36 
 
 
570 aa  322  9.999999999999999e-87  Ralstonia eutropha JMP134  Bacteria  normal  0.253624  n/a   
 
 
-
 
NC_010681  Bphyt_2259  methyl-accepting chemotaxis sensory transducer  52.87 
 
 
588 aa  322  9.999999999999999e-87  Burkholderia phytofirmans PsJN  Bacteria  normal  0.131825  normal  0.497854 
 
 
-
 
NC_007952  Bxe_B2682  methyl-accepting chemotaxis sensory transducer  47.7 
 
 
580 aa  322  9.999999999999999e-87  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2548  methyl-accepting chemotaxis protein  52.06 
 
 
525 aa  322  1.9999999999999998e-86  Methylibium petroleiphilum PM1  Bacteria  decreased coverage  0.00975221  normal  0.500866 
 
 
-
 
NC_012791  Vapar_4184  methyl-accepting chemotaxis sensory transducer  57.85 
 
 
680 aa  321  3e-86  Variovorax paradoxus S110  Bacteria  normal  0.12793  n/a   
 
 
-
 
NC_007348  Reut_B5602  methyl-accepting chemotaxis sensory transducer  54.69 
 
 
594 aa  321  3e-86  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3772  methyl-accepting chemotaxis sensory transducer  50.25 
 
 
586 aa  320  3e-86  Acidovorax sp. JS42  Bacteria  normal  0.167359  normal 
 
 
-
 
NC_007336  Reut_C6240  chemotaxis sensory transducer  58.41 
 
 
556 aa  320  3.9999999999999996e-86  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  45.32 
 
 
661 aa  320  3.9999999999999996e-86  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2019  methyl-accepting chemotaxis sensory transducer  47.83 
 
 
567 aa  320  3.9999999999999996e-86  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00054  methyl-accepting chemotaxis protein  55.4 
 
 
797 aa  319  7.999999999999999e-86  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.276697  n/a   
 
 
-
 
NC_010625  Bphy_6319  methyl-accepting chemotaxis sensory transducer  51.59 
 
 
549 aa  318  1e-85  Burkholderia phymatum STM815  Bacteria  normal  0.249944  normal 
 
 
-
 
NC_010002  Daci_3834  methyl-accepting chemotaxis sensory transducer  51.6 
 
 
595 aa  319  1e-85  Delftia acidovorans SPH-1  Bacteria  normal  0.10184  normal  0.0113192 
 
 
-
 
NC_012912  Dd1591_1453  methyl-accepting chemotaxis sensory transducer  57.47 
 
 
532 aa  318  2e-85  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  58.02 
 
 
585 aa  318  2e-85  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_012880  Dd703_1514  methyl-accepting chemotaxis sensory transducer  47.12 
 
 
562 aa  318  2e-85  Dickeya dadantii Ech703  Bacteria  normal  0.957025  n/a   
 
 
-
 
NC_011071  Smal_1846  methyl-accepting chemotaxis sensory transducer  54.02 
 
 
755 aa  318  2e-85  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.422723  normal  0.381468 
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  49.35 
 
 
575 aa  318  2e-85  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_007908  Rfer_3610  methyl-accepting chemotaxis sensory transducer  56.25 
 
 
511 aa  317  3e-85  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_5244  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  58.05 
 
 
514 aa  317  4e-85  Burkholderia ambifaria MC40-6  Bacteria  normal  0.362794  normal 
 
 
-
 
NC_008391  Bamb_4715  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  58.05 
 
 
514 aa  317  5e-85  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2241  methyl-accepting chemotaxis sensory transducer  55.56 
 
 
536 aa  317  5e-85  Acidovorax citrulli AAC00-1  Bacteria  unclonable  0.000000611014  hitchhiker  0.00000521325 
 
 
-
 
NC_009436  Ent638_2457  methyl-accepting chemotaxis sensory transducer  55.79 
 
 
555 aa  316  8e-85  Enterobacter sp. 638  Bacteria  normal  0.890786  normal 
 
 
-
 
NC_003296  RS03153  putative methyl-accepting chemotaxis transducer transmembrane protein  61.24 
 
 
524 aa  315  9.999999999999999e-85  Ralstonia solanacearum GMI1000  Bacteria  normal  0.471775  normal  0.0817308 
 
 
-
 
NC_007404  Tbd_1618  chemotaxis sensory transducer  53.52 
 
 
557 aa  315  9.999999999999999e-85  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.126465 
 
 
-
 
NC_012912  Dd1591_0695  methyl-accepting chemotaxis sensory transducer  51.57 
 
 
561 aa  315  9.999999999999999e-85  Dickeya zeae Ech1591  Bacteria  normal  0.305861  n/a   
 
 
-
 
NC_009708  YpsIP31758_1642  methyl-accepting chemotaxis protein  57 
 
 
557 aa  315  1.9999999999999998e-84  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4188  methyl-accepting chemotaxis sensory transducer with Cache sensor  65.77 
 
 
566 aa  315  1.9999999999999998e-84  Variovorax paradoxus S110  Bacteria  normal  0.210427  n/a   
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  54.6 
 
 
585 aa  315  1.9999999999999998e-84  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_007510  Bcep18194_A3360  methyl-accepting chemotaxis sensory transducer  52.93 
 
 
655 aa  315  1.9999999999999998e-84  Burkholderia sp. 383  Bacteria  normal  0.139099  normal 
 
 
-
 
NC_010681  Bphyt_2793  methyl-accepting chemotaxis sensory transducer  52.79 
 
 
573 aa  315  1.9999999999999998e-84  Burkholderia phytofirmans PsJN  Bacteria  normal  0.22826  normal  0.238924 
 
 
-
 
NC_010465  YPK_1753  methyl-accepting chemotaxis sensory transducer  57 
 
 
557 aa  315  1.9999999999999998e-84  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4050  methyl-accepting chemotaxis sensory transducer  61.76 
 
 
615 aa  314  1.9999999999999998e-84  Ralstonia pickettii 12J  Bacteria  normal  0.996584  normal 
 
 
-
 
NC_010515  Bcenmc03_4906  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  58.05 
 
 
514 aa  314  1.9999999999999998e-84  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_5243  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  57.38 
 
 
514 aa  315  1.9999999999999998e-84  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0641076  normal 
 
 
-
 
NC_012857  Rpic12D_4162  methyl-accepting chemotaxis sensory transducer  61.76 
 
 
615 aa  314  1.9999999999999998e-84  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2496  methyl-accepting chemotaxis sensory transducer  55.72 
 
 
537 aa  314  1.9999999999999998e-84  Acidovorax citrulli AAC00-1  Bacteria  decreased coverage  0.00000862286  decreased coverage  0.00394801 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>