| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1600 |
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| Symbol | |
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| ID | 6162619 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1697384 |
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| End bp | 1699168 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641664354 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001790632 |
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| Protein GI | 171058283 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00034667 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTTTGAAA GCCTGCAGAC CGTGATGCGG CAGTTCTCGA TCCGCCTGCG CATGGCCGGA
GCGGTGATCA TGGTGCTGGC GCTGTTTGCG CTGTTTGCCG CGCTTGCGCT GGGCATCGGC
ATGAACCTGC AGCAGCAGAA CCGCCATTTC ATCGAGCACT CGATGGTCGA GCAGGGCCAT
GTGACGCAGA TCCGCAGCCT GCTCGGCGAG GTGCAGGTGG CCGAGAAGAG CATGGTGATC
GACTACGAGA ACGCCGAGCT GATGACGGCC CACCGCGCTG CCTGGGACAC CGCTGCCAAG
GGGCTGCGCG CAGCGCTTGC CGCCATGATG GACGGCGAGG AAGACGCCGA CAACCTGGTC
GCGCGCGACG CGATCGCCCG GCTCGACGAA TACCTCGCCA CCACCGGCAA GGCGGTCAGC
AACGCCCAGG CGGGTGTCTA CGACAGTGCC AAGGCGGTCG ACCGGGTGCT CGAGCGGTCC
AAGGTGCTGA TGGTCGGCGT GGTCAAGAAC GTGGCCGAGA TCCAGCAGAT CGTGGAGGCC
GAAGCGGTCG CCACGCAGGC CGAGATCGAG GCCTCGACCC GCACCGCGCT GATGCTGTTC
GCGGCCTCGC TGGCGCTGGT GGTGGTGCTG GTGACGCCGA TGACCTTGAT CAACTCGCGC
AGCATCGTGC GTCCGATCGA CGAGGCACGC CGCTTTGCCG CCTCGATCGC CCAGGGCGAC
CTGAGCGTGC GCCTGGCGGT GACGGGCCGC GACGAAGCGG CCGAGCTGAT GCGCGCGCTG
GTCGAGATGC AGCAGTCGCT GCAGACGATG GTGGGCAGCA TCCGCAGCAG CGCCGAGTCG
ATCTCGGTGG CCAGCACCGA AATCGCCAGC GGCAACCAGG ACCTGTCGGG CCGCACCGAA
CAGACCGCCA GCAACCTGCA GCACGCCGCC AGCTCGATGG AGCACCTGAC CGGCACGGTG
CGGCAGACCG CCGACTCGGC CCGCACCGCC AACCAGCTGG CCGTCTCGGC CGCCGAGGCC
GCGCAGCGCG GTGGCAGCGT GGTCTCGCAG GTGGTCACCA ACATGGAGGA GATCAACGCC
AGCTCGAAGA AGATCGCCGA CATCATCGGC GTGATCGACG GCATCGCCTT CCAGACCAAC
ATCCTGGCGC TCAATGCGGC CGTCGAAGCG GCGCGCGCCG GTGAACAGGG CCGCGGCTTC
GCGGTCGTGG CCGGCGAGGT GCGCAACCTG GCGCAGCGCA GCGCCAACGC GGCGCGCGAG
ATCAAGAGCC TGATCGGCGC CAGCGTCGAC AAGGTCGAGA GCGGCGCACG CCTGGTGCAC
GACGCCGGCA GCACGATGAG CGAGATCGTC TCCAGCGTGC AGCGGGTCAC CGACATCATC
GGCGAGATCA CCGCGGCCAC CACCGAGCAG AGCGGCGAGC TCGGCCAGGT CAACGCCACC
GTCAACCAGC TCGATCAGAT GACGCAGCAG AACGCCGCGC TGGTCGAGCA GAGCGCGGCC
GCAGCCGAGA GCCTGAAGGA GCAGGCGCTC AAGCTGTCCG ACGTGGTGAA GGCCTTCACC
GTCGGCAGCG GCGCAATGGG CGGCGACAGC CCGGTGTCGT ACACCGCCGT GCCGTCGATG
CCCGCACGGC CGGTCACATC GACCTACCAG CCCAAGCCGG TGCCGGTGTC CGCGCCCAAG
GCGGCTCCGC CTGCTCCCCG CGCCGAGGCG CCGGCCAAGG CCGAACCCCG GGCAGAACCG
CAGGCTGCGA TGGCGACATC CGACGGCGAC TGGGAAACCT TCTGA
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| Protein sequence | MFESLQTVMR QFSIRLRMAG AVIMVLALFA LFAALALGIG MNLQQQNRHF IEHSMVEQGH
VTQIRSLLGE VQVAEKSMVI DYENAELMTA HRAAWDTAAK GLRAALAAMM DGEEDADNLV
ARDAIARLDE YLATTGKAVS NAQAGVYDSA KAVDRVLERS KVLMVGVVKN VAEIQQIVEA
EAVATQAEIE ASTRTALMLF AASLALVVVL VTPMTLINSR SIVRPIDEAR RFAASIAQGD
LSVRLAVTGR DEAAELMRAL VEMQQSLQTM VGSIRSSAES ISVASTEIAS GNQDLSGRTE
QTASNLQHAA SSMEHLTGTV RQTADSARTA NQLAVSAAEA AQRGGSVVSQ VVTNMEEINA
SSKKIADIIG VIDGIAFQTN ILALNAAVEA ARAGEQGRGF AVVAGEVRNL AQRSANAARE
IKSLIGASVD KVESGARLVH DAGSTMSEIV SSVQRVTDII GEITAATTEQ SGELGQVNAT
VNQLDQMTQQ NAALVEQSAA AAESLKEQAL KLSDVVKAFT VGSGAMGGDS PVSYTAVPSM
PARPVTSTYQ PKPVPVSAPK AAPPAPRAEA PAKAEPRAEP QAAMATSDGD WETF
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