| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5244 |
|---|
| Symbol | |
|---|
| ID | 6180704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 2450804 |
|---|
| End bp | 2452348 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641685000 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
|---|
| Protein accession | YP_001811905 |
|---|
| Protein GI | 172064254 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.362794 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAACA ACCAGCCTGT CACCCAGCAA GAATTCGAAT TCCCCGACGA CGTCACGCTG
ATGTCGACCA CCGATGCCGA TAGCATCATC ACCTACGCGA ACACGACGTT CGCGCACGTG
AGCGGCTTCT CGACCGACGA ACTCGTCGGC CAGCCGCACA ACGTCGTGCG GCACGCGGAC
ATGCCGAAGG AGGCGTTCGC CGACATGTGG GCGACGCTGA AGAACGGCGA ACCGTGGACC
GCGCTCGTGA AGAACCGCCG CAAGAACGGC GACCATTACT GGGTGCGCGC GAACGCGGTG
CCCGTGATGC GCAACGGCGC GCCGCACGGC TACATGTCGG TGCGCACCAG GGCGCCGCGC
GACGAGGTCG CGGCCGTCGA CGCGCTGTAT CGCGCGTTCA GCGAGGGCAA GGCGGGCCAG
CGCCGCTTCC ACAAGGGCTT GATCGTCCGG ACCGGGCTGC TGCGCATCGC GTCGCTGCCG
CAGACGATGT CGGTGCGCGC GCGCGTTCAT GCGGCGCTGT GTGTGCTGGC GCCAGCGGTC
GTCGGCGCAG GCTGGGCCTG CGGGCTGACC GGTGGCGGGC TCGCGGCGTT CGCGGCCGCG
ACGGCCGGTG TGTCGGTTGC CGCCGGGCTG TGGCTCGATG CGCAGATCGT GCGTCCGCTG
AAGCAGCTGC ACGACCAGGC GCTGAACGTC GCGACCGGCG AAAGCCGGCG TGGCGTGCGG
ATGAACCGCG TCGACGAGAT CGGCATGACG CTGCGCACGA TCAACCAGCT CGGATTGATG
TTCCGCTGGC TCGTCGACGA CGTCAGCGAG CAGGTGCACA ACGTGCAGCG CGCGAGCAAC
GAGATCGCGC AGGGCAACAA CGACCTGAGC GCGCGCACCG AACAGGCCGC GTCGAGCGTG
CAGCAGACTG CCGCATCGAT GGCCGAGATG ACGGCCACCG TCGACAGCAA TGCGGAGACT
GCGCTGCAGG CGAATCGCTT TGCGGTGTCC GCGAGCGATG CGGCCGAACG CGGCGGCCAG
GCGGTGAGCG AGGTCATCAC GACGATGCGC GACATCACTG AGAGCTCGCG CAAGATCGCC
GATATCATCG GCGTGATCGA CGGGATCGCG TTCCAGACCA ACATCCTCGC GCTGAACGCG
GCAGTCGAAG CGGCGCGCGC GGGCGAACAG GGGCGTGGTT TCGCAGTGGT TGCCGGCGAG
GTGCGGGCGC TCGCGCAGCG CAGCGCGAAC GCGGCGAAGG AAATCAAGAC GCTGATCGGC
GCGAGCGTCG ACCGGGTCGA GTCGGGTGCC CGGCGGGTCG ACGACGCCGG CAGGACGATG
GAGGACATCG TCACGCAGGT GAAGCGCGTG TCGGACCTGA TCGCGGAAAT CAGCTCGTCG
ACGGCCGAGC AGAGCACCGG CGTCGCGCAG GTCGACCAGG CGGTCGTGCA TCTGGACAAC
ATCACGCAGC AGAACGCGGC GCTGGTCGAG CAAAGCGCGG CGGCGTCGGA AAGCCTCAAG
CAGCAGGCGA CACGGCTCGT CGATGCGGTG AACGTGTTTC GGTAA
|
|---|
| Protein sequence | MRNNQPVTQQ EFEFPDDVTL MSTTDADSII TYANTTFAHV SGFSTDELVG QPHNVVRHAD
MPKEAFADMW ATLKNGEPWT ALVKNRRKNG DHYWVRANAV PVMRNGAPHG YMSVRTRAPR
DEVAAVDALY RAFSEGKAGQ RRFHKGLIVR TGLLRIASLP QTMSVRARVH AALCVLAPAV
VGAGWACGLT GGGLAAFAAA TAGVSVAAGL WLDAQIVRPL KQLHDQALNV ATGESRRGVR
MNRVDEIGMT LRTINQLGLM FRWLVDDVSE QVHNVQRASN EIAQGNNDLS ARTEQAASSV
QQTAASMAEM TATVDSNAET ALQANRFAVS ASDAAERGGQ AVSEVITTMR DITESSRKIA
DIIGVIDGIA FQTNILALNA AVEAARAGEQ GRGFAVVAGE VRALAQRSAN AAKEIKTLIG
ASVDRVESGA RRVDDAGRTM EDIVTQVKRV SDLIAEISSS TAEQSTGVAQ VDQAVVHLDN
ITQQNAALVE QSAAASESLK QQATRLVDAV NVFR
|
|---|
| |