90 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Pnap_0157  CDS  NC_008781  166550  166822  273  hypothetical protein  YP_980403  decreased coverage  0.000105226  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0158  CDS  NC_008781  166913  167155  243  hypothetical protein  YP_980404  decreased coverage  1.69557e-05  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0198  CDS  NC_008781  209585  209962  378  30S ribosomal protein S12  YP_980444  decreased coverage  2.16597e-05  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0344  CDS  NC_008781  340964  341587  624  30S ribosomal protein S4  YP_980588  normal  0.311272  decreased coverage  4.19462e-05  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0413  CDS  NC_008781  422891  424816  1926  ABC transporter related  YP_980657  decreased coverage  0.00715783  hitchhiker  2.49616e-07  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0624  CDS  NC_008781  660757  661482  726  deoxyribonuclease I  YP_980864  decreased coverage  0.00856225  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0655  CDS  NC_008781  694761  696326  1566  glucose-6-phosphate isomerase  YP_980895  normal  0.0621546  decreased coverage  0.00285419  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0656  CDS  NC_008781  696423  696752  330  hypothetical protein  YP_980896  hitchhiker  0.00883836  decreased coverage  0.00160249  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0657  CDS  NC_008781  696891  698540  1650  chaperonin GroEL  YP_980897  unclonable  1.138e-06  decreased coverage  0.00270634  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0658  CDS  NC_008781  698644  698934  291  co-chaperonin GroES  YP_980898  unclonable  9.33767e-09  decreased coverage  0.00156326  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0659  CDS  NC_008781  699292  699978  687  hypothetical protein  YP_980899  hitchhiker  8.68215e-06  decreased coverage  0.00174594  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0660  CDS  NC_008781  700053  701240  1188  S-adenosylmethionine synthetase  YP_980900  hitchhiker  0.00877697  decreased coverage  0.0019474  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0746  CDS  NC_008781  791460  792167  708  dinucleoside polyphosphate hydrolase  YP_980986  normal  decreased coverage  0.00235884  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0747  CDS  NC_008781  792164  792676  513  hypothetical protein  YP_980987  normal  decreased coverage  0.00218251  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0748  CDS  NC_008781  792718  793854  1137  gamma-glutamyl kinase  YP_980988  normal  decreased coverage  0.00331357  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_0750  CDS  NC_008781  795146  795403  258  50S ribosomal protein L27  YP_980990  normal  decreased coverage  0.00233026  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_1171  CDS  NC_008781  1248815  1249333  519  hypothetical protein  YP_981408  decreased coverage  0.00361416  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_1366  CDS  NC_008781  1455776  1456588  813  phospholipid/glycerol acyltransferase  YP_981602  normal  decreased coverage  0.000635595  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_1367  CDS  NC_008781  1456602  1457414  813  glycosyl transferase family protein  YP_981603  normal  decreased coverage  0.000706147  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_1368  CDS  NC_008781  1457411  1458148  738  3-ketoacyl-(acyl-carrier-protein) reductase  YP_981604  normal  decreased coverage  0.000606903  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_1369  CDS  NC_008781  1458145  1458600  456  hypothetical protein  YP_981605  normal  decreased coverage  0.000549037  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_1385  CDS  NC_008781  1473043  1474452  1410  peptidase U62, modulator of DNA gyrase  YP_981620  decreased coverage  8.08939e-06  normal  0.0131442  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_1386  CDS  NC_008781  1474535  1475341  807  hypothetical protein  YP_981621  decreased coverage  1.07026e-06  normal  0.0105588  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_1518  CDS  NC_008781  1607645  1608493  849  hypothetical protein  YP_981753  decreased coverage  0.00888613  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_1519  CDS  NC_008781  1608571  1608942  372  monovalent cation/proton antiporter, MnhG/PhaG subunit  YP_981754  decreased coverage  0.00644946  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_1700  CDS  NC_008781  1801436  1802152  717  GntR family transcriptional regulator  YP_981934  decreased coverage  0.00690032  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_1719  CDS  NC_008781  1822336  1823352  1017  ketol-acid reductoisomerase  YP_981953  decreased coverage  0.00792328  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_1781  CDS  NC_008781  1893611  1896340  2730  pyruvate dehydrogenase subunit E1  YP_982012  unclonable  0.000127285  decreased coverage  0.000322845  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2013  CDS  NC_008781  2139655  2140263  609  hypothetical protein  YP_982243  decreased coverage  8.68215e-06  normal  0.600676  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2123  CDS  NC_008781  2260531  2261298  768  short-chain dehydrogenase/reductase SDR  YP_982353  decreased coverage  0.000297813  normal  0.0786529  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2126  CDS  NC_008781  2263454  2265097  1644  cyclohexanecarboxylate-CoA ligase  YP_982356  normal  0.191102  decreased coverage  0.00946818  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2127  CDS  NC_008781  2265137  2266135  999  hypothetical protein  YP_982357  normal  decreased coverage  0.00713348  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2128  CDS  NC_008781  2266235  2267014  780  enoyl-CoA hydratase/isomerase  YP_982358  normal  decreased coverage  0.00663938  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2133  CDS  NC_008781  2271368  2273371  2004  acetoacetyl-CoA synthase  YP_982363  normal  0.569736  decreased coverage  0.00936242  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2137    NC_008781  2277802  2278297  496      normal  0.12052  decreased coverage  0.00552673  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2138  CDS  NC_008781  2278333  2279328  996  hypothetical protein  YP_982367  normal  0.104945  decreased coverage  0.00594387  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2139  CDS  NC_008781  2279372  2280244  873  HpcH/HpaI aldolase  YP_982368  normal  0.747659  decreased coverage  0.00493167  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2140  CDS  NC_008781  2280237  2281622  1386  MmgE/PrpD family protein  YP_982369  normal  decreased coverage  0.00607749  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2141  CDS  NC_008781  2281725  2282906  1182  L-carnitine dehydratase/bile acid-inducible protein F  YP_982370  normal  decreased coverage  0.00510595  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2142  CDS  NC_008781  2282922  2284085  1164  acyl-CoA dehydrogenase domain-containing protein  YP_982371  normal  decreased coverage  0.00458594  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2292  CDS  NC_008781  2432803  2433054  252  hypothetical protein  YP_982521  decreased coverage  2.53306e-06  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2316  CDS  NC_008781  2454603  2454902  300  putative ferredoxin like protein; FixX  YP_982545  decreased coverage  0.00117269  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2318  CDS  NC_008781  2455242  2455721  480  tetratricopeptide TPR_2  YP_982547  decreased coverage  0.00165339  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2319  CDS  NC_008781  2455767  2456369  603  NifQ family protein  YP_982548  decreased coverage  0.00231718  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2537  CDS  NC_008781  2674053  2676323  2271  (p)ppGpp synthetase I, SpoT/RelA  YP_982761  decreased coverage  0.00663733  normal  0.650482  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2572  CDS  NC_008781  2708202  2708609  408  hypothetical protein  YP_982796  normal  0.0331856  decreased coverage  0.000119045  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2573  CDS  NC_008781  2708817  2709509  693  hypothetical protein  YP_982797  decreased coverage  0.0057629  decreased coverage  0.000137367  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2574  CDS  NC_008781  2709588  2710121  534  transposase and inactivated derivative  YP_982798  normal  0.0224006  decreased coverage  0.000135385  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2575  CDS  NC_008781  2710126  2710659  534  ISSod10, transposase OrfB  YP_982799  normal  0.0505521  decreased coverage  0.000120768  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2601  CDS  NC_008781  2737166  2738164  999  ribokinase-like domain-containing protein  YP_982824  decreased coverage  3.38156e-06  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2602  CDS  NC_008781  2738295  2739293  999  periplasmic binding protein/LacI transcriptional regulator  YP_982825  decreased coverage  2.25562e-06  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2712  CDS  NC_008781  2859808  2860668  861  short-chain dehydrogenase/reductase SDR  YP_982935  decreased coverage  1.74886e-05  normal  0.399546  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2713  CDS  NC_008781  2860727  2861578  852  inner-membrane translocator  YP_982936  decreased coverage  1.81558e-06  normal  0.385193  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2729  CDS  NC_008781  2874806  2875678  873  inner-membrane translocator  YP_982952  normal  0.279205  decreased coverage  0.00299657  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2761  CDS  NC_008781  2905126  2906502  1377  hypothetical protein  YP_982984  decreased coverage  0.0046084  normal  0.122953  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2809  CDS  NC_008781  2954452  2955315  864  hypothetical protein  YP_983032  normal  0.47386  decreased coverage  4.7865e-08  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2810  CDS  NC_008781  2955312  2955869  558  hypothetical protein  YP_983033  normal  0.451239  decreased coverage  3.30402e-07  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2811  CDS  NC_008781  2955913  2956662  750  ABC-type phosphate/phosphonate transport system periplasmic component  YP_983034  normal  0.397411  decreased coverage  3.7671e-07  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2812  CDS  NC_008781  2956659  2957159  501  putative PAS/PAC sensor protein  YP_983035  normal  0.494423  decreased coverage  3.24615e-07  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2902  CDS  NC_008781  3051342  3053207  1866  N6 adenine-specific DNA methyltransferase protein, N12 class  YP_983122  normal  decreased coverage  0.00367965  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2903  CDS  NC_008781  3053347  3056193  2847  hypothetical protein  YP_983123  normal  decreased coverage  0.00602685  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2958  CDS  NC_008781  3118303  3119613  1311  trigger factor  YP_983178  normal  decreased coverage  0.00137272  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2959  CDS  NC_008781  3119932  3123147  3216  acriflavin resistance protein  YP_983179  normal  decreased coverage  0.00263635  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2962  CDS  NC_008781  3125367  3126737  1371  hypothetical protein  YP_983182  normal  0.0301366  decreased coverage  0.0010665  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2963  CDS  NC_008781  3126737  3128818  2082  ATP-dependent DNA helicase RecQ  YP_983183  unclonable  9.79868e-06  decreased coverage  0.000575313  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_2964  CDS  NC_008781  3129092  3129973  882  squalene/phytoene synthase  YP_983184  decreased coverage  0.00159614  decreased coverage  0.000921441  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_3179  CDS  NC_008781  3376984  3378072  1089  acyltransferase 3  YP_983398  normal  0.488055  decreased coverage  0.000870466  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_3180  CDS  NC_008781  3378331  3379461  1131  hypothetical protein  YP_983399  normal  decreased coverage  0.000945115  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_3342  CDS  NC_008781  3538518  3538748  231  hypothetical protein  YP_983560  decreased coverage  0.00247266  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_3559  CDS  NC_008781  3780600  3781673  1074  TRAP-type uncharacterized transport system protein, periplasmic component  YP_983776  decreased coverage  0.00321852  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_3721  CDS  NC_008781  3962683  3963375  693  NUDIX hydrolase  YP_983938  decreased coverage  1.11164e-06  decreased coverage  0.00513627  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_3722  CDS  NC_008781  3963467  3964285  819  SecC motif-containing protein  YP_983939  hitchhiker  8.37198e-05  decreased coverage  0.00531296  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_3723  CDS  NC_008781  3964419  3964844  426  hypothetical protein  YP_983940  hitchhiker  0.00130054  decreased coverage  0.00493167  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_3783  CDS  NC_008781  4034364  4034504  141  cytochrome oxidase maturation protein, cbb3-type  YP_984000  decreased coverage  0.00132842  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_3930  CDS  NC_008781  4193869  4195266  1398  hypothetical protein  YP_984147  normal  0.756384  decreased coverage  3.17604e-05  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_4118  CDS  NC_008781  4404522  4405628  1107  DNA polymerase III, beta subunit  YP_984329  decreased coverage  0.000107371  normal  0.0690123  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_4308  CDS  NC_008757  217746  218144  399  hypothetical protein  YP_973332  decreased coverage  0.00337964  normal  0.132689  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_4309  CDS  NC_008757  218164  218451  288  putative transcriptional regulator  YP_973333  decreased coverage  0.00238443  normal  0.19282  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_4373  CDS  NC_008757  280602  280955  354  DNA/RNA non-specific endonuclease  YP_973393  decreased coverage  9.71862e-05  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_4374  CDS  NC_008757  280963  281829  867  deoxyribonuclease I  YP_973394  decreased coverage  6.99204e-05  normal  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_4471  CDS  NC_008758  33169  34173  1005  parB-like partition proteins  YP_973489  hitchhiker  4.80201e-06  decreased coverage  1.87892e-20  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_4473  CDS  NC_008758  36177  38006  1830  phage integrase family protein  YP_973491  hitchhiker  0.00130209  decreased coverage  4.45159e-20  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_4683  CDS  NC_008760  64442  64915  474  hypothetical protein  YP_973840  normal  decreased coverage  0.00790472  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_4684  CDS  NC_008760  64908  65852  945  ADP-ribosyl-(dinitrogen reductase) hydrolase  YP_973841  normal  decreased coverage  0.00715956  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_4685  CDS  NC_008760  65962  66531  570  hypothetical protein  YP_973842  normal  decreased coverage  0.0057537  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_4801  CDS  NC_008761  49675  51168  1494  transposase, IS4 family protein  YP_973952  decreased coverage  0.00542003  normal  0.0251535  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_4937  CDS  NC_008759  133149  133856  708  transposase, IS4 family protein  YP_973741  decreased coverage  0.00831349  normal  0.350186  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_4984  CDS  NC_008762  10429  10821  393  hypothetical protein  YP_973974  decreased coverage  7.78396e-13  n/a    Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_R0025  misc_RNA  NC_008781  1762664  1762765  102  SRP RNA    decreased coverage  0.00341222  normal  0.445968  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
Pnap_R0049  tRNA  NC_008781  3119726  3119812  87  tRNA-Leu    normal  decreased coverage  0.000776384  Polaromonas naphthalenivorans CJ2  Bacteria 
 
 
-
 
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