| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2964 |
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| Symbol | |
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| ID | 4689238 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 3129092 |
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| End bp | 3129973 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639835977 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_983184 |
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| Protein GI | 121605855 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00159614 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000921441 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGCCACATT CCGTCATTTC AGCCTGCGAC AATCCCCGCA TGACGCCAGA GAACTATGTC
CAGCAAAAAG CCGCCGCATC CGGCAGCAGT TTTTATTACG CCTTCCTCTT CCTGCCCCCG
GAAAAGCGCG CCGCCATCAC CGCTTTTTAC GCCTTCTGCC GCGAAATCGA CGATGTGGTC
GATGAAGTCA CCGACCCCGG CGTGGCGCAT ACCAAGCTGG GCTGGTGGCA GGGCGAGGTC
AGCAAGTCGT TTACCGGCAA CCCGACGCAT CCGGTGATGA AGGCCTTGAT GCCCATGACC
GCCACCTATG GCATTGAAGC GCGGCATCTG CAGGCGGTCA TCGAAGGCTG CCAGATGGAT
TTGACGCAAA ACCGCTACCT GGATTTTCCG GCCCTGCAGC GCTACTGCCA CCTGGTCGCC
GGCATCGTCG GCGAAGTGGC GGCGCGCATC TTCGGCCAGA CCGACGACGC CACCACCGCC
TACGCGCACA AGCTGGGCCT GGCTTTCCAG CTCACCAACA TCATCCGCGA CGTGGGCGAA
GACGCCATGC GCGGGCGCAT CTACCTGCCG GTCAACGAAC TGCAGCAGTT CGATGTGAAG
GCGCACGAAG TCCTCAAGCG CCAGTATTCG GACCGCTTCA CCGCGCTGAT GAAGTTCCAG
ACCGAGCGCG CCTTGGGCCT GTACGACGAG GCGCTGGCCC TGCTGCCCGC CGCCGACCGC
CGCGCCCAGA AGCCCGGCCT GATGATGGCC AGCATCTACC GCACGCTGCT GCGCGAAATC
GCCGCCGACA ACTACCAGGT GCTGCACCAG CGCGTCAGCC TGACGCCGCT GCGCAAGTTC
TGGCTGGCGT GGAAAACGCA GGCTTTGGGC AAAGTGGTCT GA
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| Protein sequence | MPHSVISACD NPRMTPENYV QQKAAASGSS FYYAFLFLPP EKRAAITAFY AFCREIDDVV
DEVTDPGVAH TKLGWWQGEV SKSFTGNPTH PVMKALMPMT ATYGIEARHL QAVIEGCQMD
LTQNRYLDFP ALQRYCHLVA GIVGEVAARI FGQTDDATTA YAHKLGLAFQ LTNIIRDVGE
DAMRGRIYLP VNELQQFDVK AHEVLKRQYS DRFTALMKFQ TERALGLYDE ALALLPAADR
RAQKPGLMMA SIYRTLLREI AADNYQVLHQ RVSLTPLRKF WLAWKTQALG KVV
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