Gene Pnap_2729 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_2729 
Symbol 
ID4688374 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2874806 
End bp2875678 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content64% 
IMG OID639835737 
Productinner-membrane translocator 
Protein accessionYP_982952 
Protein GI121605623 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0559] Branched-chain amino acid ABC-type transport system, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.279205 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00299657 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCTGACCA TCCTTTTTGA CGGTATTGCC TACGGCATGC TGCTCTTCAT CCTTGCGGTC 
GGCCTGGCGG TCACCATGGG GCTGATGAAC TTCATCAACC TGGCGCACGG CGCCTTTGCC
ATGGCCGGCG GCTACATCAC GGTGCTGCTG ATGCAGCGCT TTGGCGTGCC GTTTTTGCTG
TGCCTGCCGC TGGCCTTCAT CGGCTCGGCG CTGCTGGGCG GCGTGCTCGA ACGCACGCTG
TACCGCCCGC TGTACCACAA GCCGCACCTG GACCAGGTGT TGTTTTCCAT TGGCCTGGTC
TTCATGGCGG TGGCCAGCGT GGACTACTTC GTCGGCTCGA CGCAGCAGAT CATCCAGCTG
CCCGAATGGC TCAAGGGCCG CACCGAACTG GGCAGCGGCG CCTGGATGCT GGGCATGGGG
CACTACCGGC TGTTCATCAT TGCCGTGTGC GCGGCGCTGA CCGTGGGCTT GCAGTATGTG
CTGGGCTACA CGCGCTTTGG CAGTCGGCTG CGCGCCTCGG TCGATGACCA GCGCGTTGCC
GCCGGACTGG GCATCAATGT CAACATGGTG TTTCTCACGA CCTTCGCCGT GGGCTCGGGC
CTGGCCGGCC TGGGCGGCGC GCTGGGCGCC GAGGTGCTGG GGCTGGACCC GAGCTTTCCG
CTGAAGTTCA TGGTGTACTT TTTGATCGTC GTGGCCGTGG GCGGCACCTC GTCGATCACC
GGGCCGCTGC TGGCCGCGCT GCTGCTGGGC ATTGCCGACG TGGCGGGCAA GTACTACATC
CCCAAGCTGG GTGCCTTCAT CGTCTACAGC CTGATGATCG CCATTTTGAT CTGGCGCCCG
CAAGGCCTCT TTGTGCGCAA GGGAGGCAAG TGA
 
Protein sequence
MLTILFDGIA YGMLLFILAV GLAVTMGLMN FINLAHGAFA MAGGYITVLL MQRFGVPFLL 
CLPLAFIGSA LLGGVLERTL YRPLYHKPHL DQVLFSIGLV FMAVASVDYF VGSTQQIIQL
PEWLKGRTEL GSGAWMLGMG HYRLFIIAVC AALTVGLQYV LGYTRFGSRL RASVDDQRVA
AGLGINVNMV FLTTFAVGSG LAGLGGALGA EVLGLDPSFP LKFMVYFLIV VAVGGTSSIT
GPLLAALLLG IADVAGKYYI PKLGAFIVYS LMIAILIWRP QGLFVRKGGK